platformDesign-class {oligo}R Documentation

Class "platformDesign"

Description

A class to store array related information.

Objects from the Class

Objects can be created by calls of the form new("platformDesign", ...).

Slots

featureInfo:
Object of class "environment" describing the array at the feature level.
featureTypeDescription:
Object of class "list" describing the feature types.
manufacturer:
Object of class "character".
type:
Object of class "character" describing the array type.
nrow:
Object of class "numeric" describing the number of rows of the array.
ncol:
Object of class "numeric" describing the number of columns of the array.
nwells:
Object of class "numeric" describing the number of wells per arrays, not used, but allocated for future extensions.
lookup:
Object of class "data.frame" describing location on the array for multiple-wells chips. Not used for now.
indexes:
Object of class "list"
platforms:
Object of class "character".

Methods

mmindex
signature(object = "platformDesign"): indexes for MMs.
names
signature(x = "platformDesign"): variable names available in the PDEnv.
nProbes
signature(object = "platformDesign"): number of features.
pmindex
signature(object = "platformDesign"): indexes of PMs.
probeNames
signature(object = "platformDesign", subset = "characterOrNULL"): feature names for PMs.
show
signature(object = "platformDesign"): basic description of the PDEnv.

[Package oligo version 0.99.15 Index]