probeMatch-methods {oligo}R Documentation

Accessors for perfect match (pm) and mismatch (mm) probes.

Description

Methods for perfect match and mismatch probes.

Usage

pm(object, genenames=NULL)
pmindex(object)
pm(object)<-value
mm(object, genenames=NULL)
mmindex(object)
mm(object)<-value

Arguments

object FeatureSet object
genenames character vector with the featureset names of interest
value new values to replace the PM/MM matrices.

Value

pm and mm will return respectively the PM and MM matrices associated to the FeatureSet object.
pmindex and mmindex will return vectors containing the indexes for the PM and MM probes.

Examples

## Do not run
## FeatureSetObject <- read.celfiles(list.celfiles())
## pms <- pm(FeatureSetObject)

[Package oligo version 0.99.15 Index]