A B C E F G H I L M N P R S T X
$.platformDesign | Class "platformDesign" |
$.platformDesign, FeatureSet-method | Class "FeatureSet" |
allele | Retrieve allele from PDEnv for SNP arrays |
allele,FeatureSet-method | Class "FeatureSet" |
as.data.frame.platformDesign | Coerce to a Data Frame |
basecontent | Boxplot |
bg.correct.rma | Background Correction |
boxplot,FeatureSet-method | Class "FeatureSet" |
characterOrNULL-class | Class "characterOrNULL" |
cleanPlatformName | Naming PDEnvs |
ExpressionFeatureSet-class | Subclasses of FeatureSet. |
exprs, FeatureSet-method | Class "FeatureSet" |
exprs,FeatureSet-method | Methods for FeatureSet objects |
featureIndex | Indexes of features on the array |
featureIndex,FeatureSet-method | Class "FeatureSet" |
featureInfo | Platform Design Environment |
FeatureSet-class | Class "FeatureSet" |
geneNames,FeatureSet-method | Class "FeatureSet" |
getPD | Platform Design accessor |
getPlatformDesign | Platform Design accessor |
getPlatformDesign,FeatureSet-method | Class "FeatureSet" |
hist,FeatureSet-method | Class "FeatureSet" |
i2xy | Index <-> XY |
image,FeatureSet-method | Class "FeatureSet" |
indexFeatureSetName | Indexes for feature sets. |
indexFeatureSetName,FeatureSet-method | Class "FeatureSet" |
initialize, FeatureSet-method | Methods for FeatureSet objects |
initialize,AnnotatedDataFrame-method | Methods for Class Initialization |
initialize,ANY-method | Methods for Class Initialization |
initialize,environment-method | Methods for Class Initialization |
initialize,eSet-method | Methods for Class Initialization |
initialize,ExpressionSet-method | Methods for Class Initialization |
initialize,FeatureSet-method | Methods for Class Initialization |
initialize,signature-method | Methods for Class Initialization |
initialize,SnpSet-method | Methods for Class Initialization |
initialize,traceable-method | Methods for Class Initialization |
initialize-methods | Methods for Class Initialization |
length,FeatureSet-method | Class "FeatureSet" |
list.celfiles | Functions to list CEL and XYS files. |
list.xysfiles | Functions to list CEL and XYS files. |
manufacturer | Accessors for FeatureSet objects. |
manufacturer, FeatureSet-method | Class "FeatureSet" |
manufacturer,FeatureSet-method | Methods for FeatureSet objects |
manufacturer<-, FeatureSet-method | Class "FeatureSet" |
manufacturer<-,FeatureSet-method | Methods for FeatureSet objects |
mm | Accessors for perfect match (pm) and mismatch (mm) probes. |
mm,FeatureSet-method | Class "FeatureSet" |
mm<-,FeatureSet-method | Class "FeatureSet" |
mmindex | Accessors for perfect match (pm) and mismatch (mm) probes. |
mmindex,FeatureSet-method | Class "FeatureSet" |
mmindex,platformDesign-method | Class "platformDesign" |
mmSequence | Methods to deal with sequences. |
names | Platform Design variables |
names,platformDesign-method | Class "platformDesign" |
ncol,FeatureSet-method | Class "FeatureSet" |
normalize.FeatureSet.quantiles | Quantile Normalization Functions |
normalize.quantiles | Quantile Normalization Functions |
npixels | Accessors for FeatureSet objects. |
npixels,FeatureSet-method | Class "FeatureSet" |
nProbes | Number of probes on the array |
nProbes,platformDesign-method | Class "platformDesign" |
nrow | Accessors for the dimensions of the array |
nrow,FeatureSet-method | Class "FeatureSet" |
platform | Accessors for FeatureSet objects. |
platform,FeatureSet-method | Class "FeatureSet" |
platform<-, FeatureSet-method | Class "FeatureSet" |
platform<-,FeatureSet-method | Methods for FeatureSet objects |
platformDesign-class | Class "platformDesign" |
platformDesignName | The platform design object name. |
platformDesignName,FeatureSet-method | Class "FeatureSet" |
plotDensity | Plot Densities |
pm | Accessors for perfect match (pm) and mismatch (mm) probes. |
pm,FeatureSet-method | Class "FeatureSet" |
pm<-,FeatureSet-method | Class "FeatureSet" |
pmindex | Accessors for perfect match (pm) and mismatch (mm) probes. |
pmindex,FeatureSet-method | Class "FeatureSet" |
pmindex,platformDesign-method | Class "platformDesign" |
pmSequence | Methods to deal with sequences. |
probeNames | Feature Set Names |
probeNames, FeatureSet-method | Methods for FeatureSet objects |
probeNames,FeatureSet,characterOrNULL-method | Probe Names |
probeNames,FeatureSet-method | Class "FeatureSet" |
probeNames,platformDesign,characterOrNULL-method | Probe Names |
probeNames,platformDesign-method | Class "platformDesign" |
probeNames-methods | Probe Names |
read.affybatch | Affymetrix CEL files parser |
read.celfiles | Affymetrix CEL files parser |
read.xysfiles | XYS files parser. |
readonexysfile | XYS files parser. |
readxysHeader | XYS files parser. |
rma | Robust multi-array average |
sd,FeatureSet-method | Class "FeatureSet" |
sequenceDesignMatrix | Methods to deal with sequences. |
show,FeatureSet-method | Class "FeatureSet" |
show,platformDesign-method | Class "platformDesign" |
SnpFeatureSet-class | Subclasses of FeatureSet. |
stuffForXYSandCELreaders | Affymetrix CEL files parser |
TilingFeatureSet-class | Subclasses of FeatureSet. |
type | Accessors for FeatureSet objects. |
xy2i | Index <-> XY |