Plot Densities {oligo} | R Documentation |
Plot Densities
Description
Plots the non-parametric density estimates using values contained in
the columns of a matrix.
Usage
plotDensity(mat, ylab = "density", xlab = "x", type = "l", col = 1:6,
...)
plotDensity.FeatureSet(x, col = 1:6, log=TRUE, which=c("both","pm","mm"),
ylab = "density", xlab = NULL, ...)
Arguments
mat |
A matrix containing the values to make densities in the
columns. |
x |
An FeatureSet object |
log |
logical value. If TRUE the log of the intensities in the
FeatureSet are plotted. |
ylab |
A title for the y axis. |
xlab |
A title for the x axis. |
type |
the type of the plot. |
col |
The colors to use fot the different arrays. |
which |
Feature type to be plotted. |
... |
graphical parameters can be given as arguments to plot |
Examples
## Do not run
## FeatureSetObject <- read.celfiles(list.celfiles())
## plotDensity(exprs(FeatureSetObject))
[Package
oligo version 0.99.15
Index]