Cell Signalling Using Single-Cell RNA-seq or Proteomics Data

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Documentation for package ‘SingleCellSignalR’ version 1.99.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

autocrines	autocrines accessor
autocrines-method	autocrines accessor
bsrdmComp	BSRDataModelComp object accessor
bsrdmComp-method	BSRDataModelComp object accessor
cellNetBubblePlot	Overview of cellular networks
example_dataset	An example of single-cell RNA-seq data set
getAutocrines	Method to retrieve autocrine interactions
getAutocrines-method	Method to retrieve autocrine interactions
getParacrines	Method to retrieve paracrine interactions
getParacrines-method	Method to retrieve paracrine interactions
infParamSC	Inference parameters accessor
infParamSC-method	Inference parameters accessor
paracrines	paracrines accessor
paracrines-method	paracrines accessor
performInferences	Inference of ligand-receptor interactions based on regulation
performInferences-method	Inference of ligand-receptor interactions based on regulation
populations	populations accessor
populations-method	populations accessor
SCSRNet	Instantiate a SCSRNet object from expression data
SCSRNet-class	SingleCellSignalR cellular network object
SCSRNoNet	Prepare a SCSRNoNet object from expression data
SCSRNoNet-class	SingleCellSignalR no network object