Shiny app for canonical and back splicing analysis (i.e.
circular and mRNA analysis)
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Documentation for package ‘Ularcirc’ version 1.27.2
Help Pages
| BSJ_details | BSJ_details This function returns details of a BSJ string and returns a list of coordinates. Can accept two different formats, Ularcirc or generic. |
| bsj_fastq_generate | bsj_fastq_generate |
| bsj_to_circRNA_sequence | bsj_to_circRNA_sequence |
| chimericFilters | chimericFilters |
| chimericStats | chimericStats |
| circSequence | circSequence This function returns pre-defined full length circRNA sequences. |
| Compatible_Annotation_DBs | Compatible_Annotation_DBs |
| FilterChimericJuncs | FilterChimericJuncs |
| FilterChimeric_Ularcirc | Wrapper function for Ularcirc shiny app which expects a list of objects to be returned |
| Junction_Sequence_from_Genome | Grab_BS_Junc_Sequence |
| loadSTAR_chimeric | loadSTAR_chimeric |
| load_miRBase_fasta | load_miRBase_fasta This function extracts species specific mirbase sequences as a Biostrings RNAstringset. |
| miR_binding_site_Analysis | miR_binding_site_Analysis This function analyses a genomic (RNA or DNA) sequence for matching miRNA seed sequences. |
| plot_AllJunctions | plot_AllJunctions |
| RAD_score | RAD_score |
| SelectUniqueJunctions | SelectUniqueJunctions |
| sequence_from_exon_coords | sequence_from_exon_coords |
| Ularcirc | Ularcirc |