Network Analysis for MS-based Proteomics Experiments
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Documentation for package ‘MSstatsBioNet’ version 1.1.5
Help Pages
| .populateHgncIdsInDataFrame | Populate HGNC IDs in Data Frame |
| .populateHgncNamesInDataFrame | Populate HGNC Names in Data Frame |
| .populateKinaseInfoInDataFrame | Populate Kinase Info in Data Frame |
| .populatePhophataseInfoInDataFrame | Populate Phosphatase Info in Data Frame |
| .populateTranscriptionFactorInfoInDataFrame | Populate Transcription Factor Info in Data Frame |
| .populateUniprotIdsInDataFrame | Populate Uniprot IDs in Data Frame |
| .validateAnnotateProteinInfoFromIndraInput | Validate Annotate Protein Info Input |
| annotateProteinInfoFromIndra | Annotate Protein Information from Indra |
| exportNetworkToHTML | Export network data with Cytoscape visualization |
| generateCytoscapeConfig | Generate Cytoscape visualization configuration |
| generateJavaScriptCode | Generate JavaScript code from Cytoscape configuration |
| getPathwaysFromIndra | Get pathways ranked on relevance from INDRA DB |
| getSubnetworkFromIndra | Get subnetwork from INDRA database |
| previewNetworkInBrowser | Preview network in browser |
| visualizeNetworks | Create visualization of network |