| cluster_dynamics |
cluster dynamics profiles of metabolites |
| compare_dynamics |
Comparison of metabolite dynamics clusters under different experimental conditions |
| compare_metabolites |
Comparison of metabolite sets between dynamics clusters of different experimental conditions |
| diagnostics_dynamics |
Extracts diagnostic criteria from numeric fit of Bayesian model of dynamics |
| estimates_dynamics |
Extracts parameter estimates from numeric fit of Bayesian model of dynamics |
| fit_dynamics_model |
Fits dynamics model |
| heatmap_dynamics |
plot bubble heatmap from the numerical fit of compare_dynamics() |
| heatmap_metabolites |
plot heatmap from comparison of metabolite composition compare_metabolites() |
| longitudinalMetabolomics |
A simulated data set of longitudinal concentration tables of metabolites. |
| longitudinalMetabolomics_df |
A simulated data set of longitudinal concentration tables of metabolites. In contrast to "longitudinalMetabolomics" this dataset is in data frame format. It was simulated with a different seed compared to longitudinalMetabolomics so the results can deviate. |
| metabolite_modules |
KEGG Query Results of experimental metabolites |
| modules_compounds |
Background KEGG Query Results Of Functional Modules |
| ORA_hypergeometric |
OverRepresentationAnalysis with a hypergeometric model |
| plot_cluster |
visualize clustering solution of cluster_dynamics() |
| plot_diagnostics |
Plot diagnostic criteria of numerical fit of Bayesian model of dynamics |
| plot_estimates |
Visualization of parameter estimates from numeric fit of Bayesian model of dynamics |
| plot_ORA |
Plot results of over-representation analysis with ORA_hypergeometric() |
| plot_PPC |
Plots posterior predictive check of numerical fit of Bayesian dynamics model |
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