BREW3R.r
This is the development version of BREW3R.r; for the stable release version, see BREW3R.r.
R package associated to BREW3R
Bioconductor version: Development (3.21)
This R package provide functions that are used in the BREW3R workflow. This mainly contains a function that extend a gtf as GRanges using information from another gtf (also as GRanges). The process allows to extend gene annotation without increasing the overlap between gene ids.
Author: Lucille Lopez-Delisle [aut, cre] (ORCID:
Maintainer: Lucille Lopez-Delisle <lucille.delisle at epfl.ch>
citation("BREW3R.r")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BREW3R.r")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BREW3R.r")| BREW3R.r | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GenomeAnnotation, Software |
| Version | 1.3.0 |
| In Bioconductor since | BioC 3.19 (R-4.4) (0.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | GenomicRanges, methods, rlang, S4Vectors, utils |
| System Requirements | |
| URL | https://github.com/lldelisle/BREW3R.r |
| Bug Reports | https://github.com/lldelisle/BREW3R.r/issues/ |
See More
| Suggests | testthat (>= 3.0.0), IRanges, knitr, rmarkdown, BiocStyle, rtracklayer |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BREW3R.r_1.3.0.tar.gz |
| Windows Binary (x86_64) | BREW3R.r_1.3.0.zip |
| macOS Binary (x86_64) | BREW3R.r_1.3.0.tgz |
| macOS Binary (arm64) | BREW3R.r_1.3.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BREW3R.r |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BREW3R.r |
| Bioc Package Browser | https://code.bioconductor.org/browse/BREW3R.r/ |
| Package Short Url | https://bioconductor.org/packages/BREW3R.r/ |
| Package Downloads Report | Download Stats |