BioCartaImage
This is the development version of BioCartaImage; for the stable release version, see BioCartaImage.
BioCarta Pathway Images
Bioconductor version: Development (3.21)
The core functionality of the package is to provide coordinates of genes on the BioCarta pathway images and to provide methods to add self-defined graphics to the genes of interest.
Author: Zuguang Gu [aut, cre] (ORCID:
Maintainer: Zuguang Gu <z.gu at dkfz.de>
citation("BioCartaImage")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BioCartaImage")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BioCartaImage")| Customize BioCarta Pathway Images | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | BioCarta, Pathways, Software, Visualization |
| Version | 1.5.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (1 year) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.3.0) |
| Imports | magick, grid, stats, grDevices, utils |
| System Requirements | |
| URL | https://github.com/jokergoo/BioCartaImage |
| Bug Reports | https://github.com/jokergoo/BioCartaImage/issues |
See More
| Suggests | testthat, knitr, BiocStyle, ragg |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BioCartaImage_1.5.0.tar.gz |
| Windows Binary (x86_64) | BioCartaImage_1.5.0.zip |
| macOS Binary (x86_64) | BioCartaImage_1.5.0.tgz |
| macOS Binary (arm64) | BioCartaImage_1.5.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BioCartaImage |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BioCartaImage |
| Bioc Package Browser | https://code.bioconductor.org/browse/BioCartaImage/ |
| Package Short Url | https://bioconductor.org/packages/BioCartaImage/ |
| Package Downloads Report | Download Stats |