CGEN
This is the development version of CGEN; for the stable release version, see CGEN.
An R package for analysis of case-control studies in genetic epidemiology
Bioconductor version: Development (3.21)
This is a package for analysis of case-control data in genetic epidemiology. It provides a set of statistical methods for evaluating gene-environment (or gene-genes) interactions under multiplicative and additive risk models, with or without assuming gene-environment (or gene-gene) independence in the underlying population.
Author: Samsiddhi Bhattacharjee [aut], Nilanjan Chatterjee [aut], Summer Han [aut], Minsun Song [aut], William Wheeler [aut], Matthieu de Rochemonteix [aut], Nilotpal Sanyal [aut], Justin Lee [cre]
Maintainer: Justin Lee <jhylee at stanford.edu>
citation("CGEN")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CGEN")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CGEN")| CGEN Scan Vignette | R Script | |
| CGEN Vignette | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Clustering, MultipleComparison, SNP, Software |
| Version | 3.43.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (14 years) |
| License | GPL-2 + file LICENSE |
| Depends | R (>= 4.0), survival, mvtnorm |
| Imports | stats, graphics, utils, grDevices |
| System Requirements | |
| URL |
See More
| Suggests | cluster |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CGEN_3.43.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/CGEN |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CGEN |
| Bioc Package Browser | https://code.bioconductor.org/browse/CGEN/ |
| Package Short Url | https://bioconductor.org/packages/CGEN/ |
| Package Downloads Report | Download Stats |