ClustAll

This is the development version of ClustAll; for the stable release version, see ClustAll.

ClustAll: Data driven strategy to robustly identify stratification of patients within complex diseases


Bioconductor version: Development (3.21)

Data driven strategy to find hidden groups of patients with complex diseases using clinical data. ClustAll facilitates the unsupervised identification of multiple robust stratifications. ClustAll, is able to overcome the most common limitations found when dealing with clinical data (missing values, correlated data, mixed data types).

Author: Asier Ortega-Legarreta [aut, cre] (ORCID: ), Sara Palomino-Echeverria [aut]

Maintainer: Asier Ortega-Legarreta <aortegal at navarra.es>

Citation (from within R, enter citation("ClustAll")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ClustAll")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ClustAll")
ClustALL User's Guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, DimensionReduction, PrincipalComponent, Software, StatisticalMethod
Version 1.3.0
In Bioconductor since BioC 3.19 (R-4.4) (0.5 years)
License GPL-2
Depends R (>= 4.2.0)
Imports FactoMineR, bigstatsr, clValid, doSNOW, parallel, foreach, dplyr, fpc, mice, modeest, flock, networkD3, methods, ComplexHeatmap, cluster, RColorBrewer, circlize, grDevices, ggplot2, grid, stats, utils, pbapply
System Requirements
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Suggests RUnit, knitr, BiocGenerics, rmarkdown, BiocStyle, roxygen2
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ClustAll_1.3.0.tar.gz
Windows Binary (x86_64) ClustAll_1.3.0.zip
macOS Binary (x86_64) ClustAll_1.3.0.tgz
macOS Binary (arm64) ClustAll_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ClustAll
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ClustAll
Bioc Package Browser https://code.bioconductor.org/browse/ClustAll/
Package Short Url https://bioconductor.org/packages/ClustAll/
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