ExploreModelMatrix
This is the development version of ExploreModelMatrix; for the stable release version, see ExploreModelMatrix.
Graphical Exploration of Design Matrices
Bioconductor version: Development (3.21)
Given a sample data table and a design formula, ExploreModelMatrix generates an interactive application for exploration of the resulting design matrix. This can be helpful for interpreting model coefficients and constructing appropriate contrasts in (generalized) linear models. Static visualizations can also be generated.
Author: Charlotte Soneson [aut, cre] (ORCID:
Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>
citation("ExploreModelMatrix")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ExploreModelMatrix")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExploreModelMatrix")| ExploreModelMatrix | HTML | R Script |
| ExploreModelMatrix-deploy | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DifferentialExpression, ExperimentalDesign, Regression, ShinyApps, Software |
| Version | 1.19.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | shiny (>= 1.5.0), shinydashboard, DT, cowplot, utils, dplyr, magrittr, tidyr, ggplot2, stats, methods, rintrojs, scales, tibble, MASS, limma, S4Vectors, shinyjs |
| System Requirements | |
| URL | https://github.com/csoneson/ExploreModelMatrix |
| Bug Reports | https://github.com/csoneson/ExploreModelMatrix/issues |
See More
| Suggests | testthat (>= 2.1.0), knitr, rmarkdown, htmltools, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ExploreModelMatrix_1.19.0.tar.gz |
| Windows Binary (x86_64) | ExploreModelMatrix_1.19.0.zip (64-bit only) |
| macOS Binary (x86_64) | ExploreModelMatrix_1.19.0.tgz |
| macOS Binary (arm64) | ExploreModelMatrix_1.19.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ExploreModelMatrix |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ExploreModelMatrix |
| Bioc Package Browser | https://code.bioconductor.org/browse/ExploreModelMatrix/ |
| Package Short Url | https://bioconductor.org/packages/ExploreModelMatrix/ |
| Package Downloads Report | Download Stats |