MBQN
This is the development version of MBQN; for the stable release version, see MBQN.
Mean/Median-balanced quantile normalization
Bioconductor version: Development (3.21)
Modified quantile normalization for omics or other matrix-like data distorted in location and scale.
Author: Eva Brombacher [aut, cre] (ORCID:
Maintainer: Eva Brombacher <brombach at imbi.uni-freiburg.de>
citation("MBQN")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MBQN")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MBQN")| MBQN Package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Normalization, Preprocessing, Proteomics, Software |
| Version | 2.19.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (5 years) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 3.6) |
| Imports | stats, graphics, utils, limma(>= 3.30.13), SummarizedExperiment(>= 1.10.0), preprocessCore(>= 1.36.0), BiocFileCache, rappdirs, xml2, RCurl, ggplot2, PairedData, rmarkdown |
| System Requirements | |
| URL | https://github.com/arianeschad/mbqn |
| Bug Reports | https://github.com/arianeschad/MBQN/issues |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MBQN_2.19.0.tar.gz |
| Windows Binary (x86_64) | MBQN_2.19.0.zip |
| macOS Binary (x86_64) | MBQN_2.19.0.tgz |
| macOS Binary (arm64) | MBQN_2.19.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MBQN |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MBQN |
| Bioc Package Browser | https://code.bioconductor.org/browse/MBQN/ |
| Package Short Url | https://bioconductor.org/packages/MBQN/ |
| Package Downloads Report | Download Stats |