MuData
This is the development version of MuData; for the stable release version, see MuData.
Serialization for MultiAssayExperiment Objects
Bioconductor version: Development (3.21)
Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.
Author: Danila Bredikhin [aut, cre] (ORCID:
Maintainer: Danila Bredikhin <danila.bredikhin at embl.de>
citation("MuData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MuData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MuData")| Blood CITE-seq with MuData | HTML | R Script |
| Cord Blood CITE-seq with MuData | HTML | R Script |
| Getting started with MuDataMae | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Software |
| Version | 1.11.0 |
| In Bioconductor since | BioC 3.15 (R-4.2) (2.5 years) |
| License | GPL-3 |
| Depends | Matrix, S4Vectors, rhdf5 |
| Imports | methods, stats, MultiAssayExperiment, SingleCellExperiment, SummarizedExperiment, DelayedArray |
| System Requirements | |
| URL | https://github.com/ilia-kats/MuData |
| Bug Reports | https://github.com/ilia-kats/MuData/issues |
See More
| Suggests | HDF5Array, rmarkdown, knitr, fs, testthat, BiocStyle, covr, SingleCellMultiModal, CiteFuse, scater |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MuData_1.11.0.tar.gz |
| Windows Binary (x86_64) | MuData_1.11.0.zip |
| macOS Binary (x86_64) | MuData_1.11.0.tgz |
| macOS Binary (arm64) | MuData_1.11.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MuData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MuData |
| Bioc Package Browser | https://code.bioconductor.org/browse/MuData/ |
| Package Short Url | https://bioconductor.org/packages/MuData/ |
| Package Downloads Report | Download Stats |