RedeR
This is the development version of RedeR; for the stable release version, see RedeR.
Interactive visualization and manipulation of nested networks
Bioconductor version: Development (3.21)
RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of nested networks. Graph, node, and edge attributes can be configured using either graphical or command-line methods, following igraph syntax rules.
Author: Xin Wang [ctb], Florian Markowetz [ctb], Mauro Castro [aut, cre] (ORCID:
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>
citation("RedeR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("RedeR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RedeR")| RedeR: nested networks | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GUI, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, Software, SystemsBiology |
| Version | 3.3.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (13 years) |
| License | GPL-3 |
| Depends | R (>= 4.0), methods |
| Imports | scales, igraph |
| System Requirements | Java Runtime Environment (Java>= 11) |
| URL | https://doi.org/10.1186/gb-2012-13-4-r29 |
See More
| Suggests | knitr, rmarkdown, markdown, BiocStyle, TreeAndLeaf |
| Linking To | |
| Enhances | |
| Depends On Me | Fletcher2013b, dc3net |
| Imports Me | PANR, RTN, transcriptogramer, TreeAndLeaf |
| Suggests Me | PathwaySpace |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RedeR_3.3.0.tar.gz |
| Windows Binary (x86_64) | RedeR_3.3.0.zip |
| macOS Binary (x86_64) | RedeR_3.3.0.tgz |
| macOS Binary (arm64) | RedeR_3.3.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RedeR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RedeR |
| Bioc Package Browser | https://code.bioconductor.org/browse/RedeR/ |
| Package Short Url | https://bioconductor.org/packages/RedeR/ |
| Package Downloads Report | Download Stats |