SMAD
This is the development version of SMAD; for the stable release version, see SMAD.
Statistical Modelling of AP-MS Data (SMAD)
Bioconductor version: Development (3.21)
Assigning probability scores to protein interactions captured in affinity purification mass spectrometry (AP-MS) expriments to infer protein-protein interactions. The output would facilitate non-specific background removal as contaminants are commonly found in AP-MS data.
Author: Qingzhou Zhang [aut, cre]
Maintainer: Qingzhou Zhang <zqzneptune at hotmail.com>
citation("SMAD")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SMAD")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SMAD")| SMAD Quick Start | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | MassSpectrometry, Proteomics, Software |
| Version | 1.23.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.6.0), RcppAlgos |
| Imports | magrittr (>= 1.5), dplyr, stats, tidyr, utils, Rcpp (>= 1.0.0) |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, testthat, BiocStyle |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SMAD_1.23.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/SMAD |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SMAD |
| Bioc Package Browser | https://code.bioconductor.org/browse/SMAD/ |
| Package Short Url | https://bioconductor.org/packages/SMAD/ |
| Package Downloads Report | Download Stats |