biodbHmdb
This is the development version of biodbHmdb; for the stable release version, see biodbHmdb.
biodbHmdb, a library for connecting to the HMDB Database
Bioconductor version: Development (3.21)
The biodbHmdb library is an extension of the biodb framework package that provides access to the HMDB Metabolites database. It allows to download the whole HMDB Metabolites database locally, access entries and search for entries by name or description. A future version of this package will also include a search by mass and mass spectra annotation.
Author: Pierrick Roger [aut, cre] (ORCID:
Maintainer: Pierrick Roger <pierrick.roger at cea.fr>
citation("biodbHmdb")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("biodbHmdb")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biodbHmdb")| Introduction to the biodbHmdb package. | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 1.13.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (3 years) |
| License | AGPL-3 |
| Depends | R (>= 4.1) |
| Imports | R6, biodb(>= 1.3.2), Rcpp, zip |
| System Requirements | |
| URL | https://github.com/pkrog/biodbHmdb |
| Bug Reports | https://github.com/pkrog/biodbHmdb/issues |
See More
| Suggests | BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, covr, lgr |
| Linking To | Rcpp, testthat |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | biodbHmdb_1.13.0.tar.gz |
| Windows Binary (x86_64) | biodbHmdb_1.13.0.zip (64-bit only) |
| macOS Binary (x86_64) | biodbHmdb_1.13.0.tgz |
| macOS Binary (arm64) | biodbHmdb_1.13.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/biodbHmdb |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/biodbHmdb |
| Bioc Package Browser | https://code.bioconductor.org/browse/biodbHmdb/ |
| Package Short Url | https://bioconductor.org/packages/biodbHmdb/ |
| Package Downloads Report | Download Stats |