metabinR
This is the development version of metabinR; for the stable release version, see metabinR.
Abundance and Compositional Based Binning of Metagenomes
Bioconductor version: Development (3.21)
Provide functions for performing abundance and compositional based binning on metagenomic samples, directly from FASTA or FASTQ files. Functions are implemented in Java and called via rJava. Parallel implementation that operates directly on input FASTA/FASTQ files for fast execution.
Author: Anestis Gkanogiannis [aut, cre] (ORCID:
Maintainer: Anestis Gkanogiannis <anestis at gkanogiannis.com>
citation("metabinR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("metabinR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metabinR")| metabinR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, Clustering, Microbiome, Sequencing, Software |
| Version | 1.9.0 |
| In Bioconductor since | BioC 3.16 (R-4.2) (2 years) |
| License | GPL-3 |
| Depends | R (>= 4.3) |
| Imports | methods, rJava |
| System Requirements | Java (>= 8) |
| URL | https://github.com/gkanogiannis/metabinR |
| Bug Reports | https://github.com/gkanogiannis/metabinR/issues |
See More
| Suggests | BiocStyle, cvms, data.table, dplyr, ggplot2, gridExtra, knitr, R.utils, rmarkdown, sabre, spelling, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | metabinR_1.9.0.tar.gz |
| Windows Binary (x86_64) | metabinR_1.9.0.zip |
| macOS Binary (x86_64) | metabinR_1.9.0.tgz |
| macOS Binary (arm64) | metabinR_1.9.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/metabinR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/metabinR |
| Bioc Package Browser | https://code.bioconductor.org/browse/metabinR/ |
| Package Short Url | https://bioconductor.org/packages/metabinR/ |
| Package Downloads Report | Download Stats |