methylInheritance
This is the development version of methylInheritance; for the stable release version, see methylInheritance.
Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect
Bioconductor version: Development (3.21)
Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment and that stochastic effect can be dismissed.
Author: Astrid Deschênes [cre, aut] (ORCID:
Maintainer: Astrid Deschênes <adeschen at hotmail.com>
citation("methylInheritance")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("methylInheritance")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("methylInheritance")| Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome |
| Version | 1.31.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5) |
| Imports | methylKit, BiocParallel, GenomicRanges, IRanges, S4Vectors, methods, parallel, ggplot2, gridExtra, rebus |
| System Requirements | |
| URL | https://github.com/adeschen/methylInheritance |
| Bug Reports | https://github.com/adeschen/methylInheritance/issues |
See More
| Suggests | BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit, methInheritSim |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | methInheritSim |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | methylInheritance_1.31.0.tar.gz |
| Windows Binary (x86_64) | methylInheritance_1.31.0.zip |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/methylInheritance |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/methylInheritance |
| Bioc Package Browser | https://code.bioconductor.org/browse/methylInheritance/ |
| Package Short Url | https://bioconductor.org/packages/methylInheritance/ |
| Package Downloads Report | Download Stats |