miaDash
This is the development version of miaDash; to use it, please install the devel version of Bioconductor.
Shiny app for the interactive analysis and exploration of microbiome data
Bioconductor version: Development (3.21)
miaDash provides a Graphical User Interface for the exploration of microbiome data. This way, no knowledge of programming is required to perform analyses. Datasets can be imported, manipulated, analysed and visualised with a user-friendly interface.
Author: Giulio Benedetti [aut, cre]
, Akewak Jeba [ctb]
, Leo Lahti [aut]
Maintainer: Giulio Benedetti <giulio.benedetti at utu.fi>
citation("miaDash")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("miaDash")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("miaDash")
miaDash | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, GUI, Microbiome, ShinyApps, Software, Visualization |
Version | 0.99.11 |
In Bioconductor since | BioC 3.21 (R-4.5) |
License | Artistic-2.0 |
Depends | R (>= 4.4.0), iSEE, shiny |
Imports | ape, biomformat, htmltools, iSEEtree(>= 1.1.4), mia, rintrojs, scater, shinydashboard, shinyjs, S4Vectors, SingleCellExperiment, SummarizedExperiment, TreeSummarizedExperiment, utils, vegan |
System Requirements | |
URL | https://github.com/microbiome/miaDash |
Bug Reports | https://github.com/microbiome/miaDash/issues |
See More
Suggests | BiocStyle, knitr, philr, remotes, rmarkdown, testthat (>= 3.0.0) |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | miaDash_0.99.11.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | miaDash_0.99.11.tgz |
macOS Binary (arm64) | miaDash_0.99.11.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/miaDash |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/miaDash |
Bioc Package Browser | https://code.bioconductor.org/browse/miaDash/ |
Package Short Url | https://bioconductor.org/packages/miaDash/ |
Package Downloads Report | Download Stats |