oppti
This is the development version of oppti; for the stable release version, see oppti.
Outlier Protein and Phosphosite Target Identifier
Bioconductor version: Development (3.21)
The aim of oppti is to analyze protein (and phosphosite) expressions to find outlying markers for each sample in the given cohort(s) for the discovery of personalized actionable targets.
Author: Abdulkadir Elmas
Maintainer: Abdulkadir Elmas <abdulkadir.elmas at mssm.edu>
citation("oppti")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("oppti")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("oppti")| Outlier Protein and Phosphosite Target Identifier | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiomedicalInformatics, DifferentialExpression, GeneExpression, GeneTarget, Network, Proteomics, Regression, Software |
| Version | 1.21.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (5 years) |
| License | MIT |
| Depends | R (>= 3.5) |
| Imports | limma, stats, reshape, ggplot2, grDevices, RColorBrewer, pheatmap, knitr, methods, devtools, parallelDist |
| System Requirements | |
| URL | https://github.com/Huang-lab/oppti |
| Bug Reports | https://github.com/Huang-lab/oppti/issues |
See More
| Suggests | markdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | oppti_1.21.0.tar.gz |
| Windows Binary (x86_64) | oppti_1.21.0.zip |
| macOS Binary (x86_64) | oppti_1.21.0.tgz |
| macOS Binary (arm64) | oppti_1.21.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/oppti |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/oppti |
| Bioc Package Browser | https://code.bioconductor.org/browse/oppti/ |
| Package Short Url | https://bioconductor.org/packages/oppti/ |
| Package Downloads Report | Download Stats |