projectR
This is the development version of projectR; for the stable release version, see projectR.
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering
Bioconductor version: Development (3.21)
Functions for the projection of data into the spaces defined by PCA, CoGAPS, NMF, correlation, and clustering.
Author: Gaurav Sharma, Charles Shin, Jared Slosberg, Loyal Goff, Genevieve Stein-O'Brien
Maintainer: Genevieve Stein-O'Brien <gsteinobrien at gmail.com>
citation("projectR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("projectR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("projectR")| projectR | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | BiologicalQuestion, FunctionalPrediction, GeneRegulation, Software |
| Version | 1.23.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5.5 years) |
| License | GPL (==2) |
| Depends | R (>= 4.0.0) |
| Imports | methods, cluster, stats, limma, NMF, ROCR, ggalluvial, RColorBrewer, dplyr, fgsea, reshape2, viridis, scales, Matrix, MatrixModels, msigdbr, ggplot2, cowplot, ggrepel, umap, tsne |
| System Requirements | |
| URL | https://github.com/genesofeve/projectR/ |
| Bug Reports | https://support.bioconductor.org/t/projectR/ |
See More
| Suggests | BiocStyle, CoGAPS, gridExtra, grid, testthat, devtools, knitr, rmarkdown, ComplexHeatmap, gplots, SeuratObject |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | projectR_1.23.0.tar.gz |
| Windows Binary (x86_64) | projectR_1.23.0.zip |
| macOS Binary (x86_64) | projectR_1.23.0.tgz |
| macOS Binary (arm64) | projectR_1.23.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/projectR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/projectR |
| Bioc Package Browser | https://code.bioconductor.org/browse/projectR/ |
| Package Short Url | https://bioconductor.org/packages/projectR/ |
| Package Downloads Report | Download Stats |