rRDP
This is the development version of rRDP; for the stable release version, see rRDP.
Interface to the RDP Classifier
Bioconductor version: Development (3.21)
This package installs and interfaces the naive Bayesian classifier for 16S rRNA sequences developed by the Ribosomal Database Project (RDP). With this package the classifier trained with the standard training set can be used or a custom classifier can be trained.
Author: Michael Hahsler [aut, cre] (ORCID:
Maintainer: Michael Hahsler <mhahsler at lyle.smu.edu>
citation("rRDP")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("rRDP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rRDP")| rRDP: Interface to the RDP Classifier | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Alignment, Bayesian, Classification, DataImport, Genetics, ImmunoOncology, Infrastructure, Microbiome, SequenceMatching, Sequencing, Software |
| Version | 1.41.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (10 years) |
| License | GPL-2 + file LICENSE |
| Depends | Biostrings(>= 2.26.2) |
| Imports | rJava, utils |
| System Requirements | Java JDK 1.4 or higher |
| URL | https://github.com/mhahsler/rRDP/ |
| Bug Reports | https://github.com/mhahsler/rRDP/issues |
See More
| Suggests | rRDPData, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | rRDPData |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rRDP_1.41.0.tar.gz |
| Windows Binary (x86_64) | rRDP_1.41.0.zip |
| macOS Binary (x86_64) | rRDP_1.41.0.tgz |
| macOS Binary (arm64) | rRDP_1.41.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rRDP |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rRDP |
| Bioc Package Browser | https://code.bioconductor.org/browse/rRDP/ |
| Package Short Url | https://bioconductor.org/packages/rRDP/ |
| Package Downloads Report | Download Stats |