BioMartGOGeneSets
This is the development version of BioMartGOGeneSets; for the stable release version, see BioMartGOGeneSets.
Gene Ontology Gene Sets from BioMart
Bioconductor version: Development (3.21)
It contains pre-compiled Gene Ontology gene sets for all organisms available on the Ensembl database. It also includes GO gene sets for organisms on Ensembl Plants, Ensembl Metazoa, Ensembl Fungi and Ensembl Protists. The data was collected with the biomaRt package.
Author: Zuguang Gu [aut, cre] 
Maintainer: Zuguang Gu <z.gu at dkfz.de>
citation("BioMartGOGeneSets")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BioMartGOGeneSets")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BioMartGOGeneSets")| BioMart Gene Ontology Gene Sets Collections | HTML | R Script |
| Pre-compiled GO Gene Sets | HTML | R Script |
| Retrieve GO Gene Sets from BioMart | HTML | R Script |
| Versions | HTML | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | AnnotationData, Organism |
| Version | 0.99.11 |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0.0) |
| Imports | utils, S4Vectors, GenomicRanges |
| System Requirements | |
| URL | https://github.com/jokergoo/BioMartGOGeneSets |
See More
| Suggests | biomaRt, GO.db, GenomeInfoDb, knitr, testthat, GetoptLong, DT |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BioMartGOGeneSets_0.99.11.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/BioMartGOGeneSets/ |
| Package Downloads Report | Download Stats |