targetscan.Mm.eg.db
This is the development version of targetscan.Mm.eg.db; for the stable release version, see targetscan.Mm.eg.db.
TargetScan miRNA target predictions for mouse
Bioconductor version: Development (3.21)
TargetScan miRNA target predictions for mouse assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.
Author: Gabor Csardi <Gabor.Csardi at unil.ch>
Maintainer: James F. Reid <james.reid at ifom-ieo-campus.it>
citation("targetscan.Mm.eg.db")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("targetscan.Mm.eg.db")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| LICENSE | Text |
Details
| biocViews | AnnotationData, FunctionalAnnotation |
| Version | 0.6.1 |
| License | file LICENSE |
| Depends | R (>= 2.7.0), methods, AnnotationDbi(>= 1.18.3) |
| Imports | methods, AnnotationDbi |
| System Requirements | |
| URL |
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Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | targetscan.Mm.eg.db_0.6.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/targetscan.Mm.eg.db/ |
| Package Downloads Report | Download Stats |