HCAData
This is the development version of HCAData; for the stable release version, see HCAData.
Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor
Bioconductor version: Development (3.21)
This package allows a direct access to the dataset generated by the Human Cell Atlas project for further processing in R and Bioconductor, in the comfortable format of SingleCellExperiment objects (available in other formats here: http://preview.data.humancellatlas.org/).
Author: Federico Marini [aut, cre] (ORCID:
Maintainer: Federico Marini <marinif at uni-mainz.de>
citation("HCAData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("HCAData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HCAData")| Accessing the Human Cell Atlas datasets | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SingleCellData |
| Version | 1.23.0 |
| License | MIT + file LICENSE |
| Depends | R (>= 3.6), SingleCellExperiment |
| Imports | ExperimentHub, AnnotationHub, HDF5Array, utils |
| System Requirements | |
| URL | https://github.com/federicomarini/HCAData |
See More
| Suggests | knitr, rmarkdown, BiocStyle, scran(>= 1.11.4), BiocSingular, scater, scuttle, Rtsne, igraph, iSEE, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | OSCA.workflows |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HCAData_1.23.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HCAData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HCAData |
| Package Short Url | https://bioconductor.org/packages/HCAData/ |
| Package Downloads Report | Download Stats |