TENxVisiumData
This is the development version of TENxVisiumData; for the stable release version, see TENxVisiumData.
Visium spatial gene expression data by 10X Genomics
Bioconductor version: Development (3.21)
Collection of Visium spatial gene expression datasets by 10X Genomics, formatted into objects of class SpatialExperiment. Data cover various organisms and tissues, and include: single- and multi-section experiments, as well as single sections subjected to both whole transcriptome and targeted panel analysis. Datasets may be used for testing of and as examples in packages, for tutorials and workflow demonstrations, or similar purposes.
Author: Helena L. Crowell [aut, cre] (ORCID:
Maintainer: Helena L. Crowell <helena at crowell.eu>
citation("TENxVisiumData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TENxVisiumData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TENxVisiumData")| TENxVisiumData | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch |
| Version | 1.15.0 |
| License | MIT + file LICENSE |
| Depends | ExperimentHub, SpatialExperiment |
| Imports | utils |
| System Requirements | |
| URL | https://github.com/helenalc/TENxVisiumData |
| Bug Reports | https://github.com/helenalc/TENxVisiumData/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | SPOTlight |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TENxVisiumData_1.15.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/TENxVisiumData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TENxVisiumData |
| Package Short Url | https://bioconductor.org/packages/TENxVisiumData/ |
| Package Downloads Report | Download Stats |