affydata
This is the development version of affydata; for the stable release version, see affydata.
Affymetrix Data for Demonstration Purpose
Bioconductor version: Development (3.21)
Example datasets of a slightly large size. They represent 'real world examples', unlike the artificial examples included in the package affy.
Author: Laurent Gautier <laurent at cbs.dtu.dk>
Maintainer: Robert D Shear <rshear at ds.dfci.harvard.edu>
Citation (from within R, enter
citation("affydata")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("affydata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affydata")| affydata primer | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, MicroarrayData, Tissue, TissueMicroarrayData |
| Version | 1.55.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.4.0), affy(>= 1.23.4) |
| Imports | methods |
| System Requirements | |
| URL | https://bioconductor.org/packages/affydata |
| Bug Reports | https://github.com/rafalab/affydata/issues |
See More
| Suggests | hgu95av2cdf, hgu133acdf |
| Linking To | |
| Enhances | |
| Depends On Me | affyContam |
| Imports Me | |
| Suggests Me | affy, affycoretools, affyPLM, arrayMvout, Biostrings, gcrma, Harman, mimager, puma, pvac, TurboNorm, vsn, RobLoxBioC |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | affydata_1.55.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/affydata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/affydata |
| Package Short Url | https://bioconductor.org/packages/affydata/ |
| Package Downloads Report | Download Stats |