benchmarkfdrData2019

This package is for version 3.21 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see benchmarkfdrData2019.

Data and Benchmarking Results from Korthauer and Kimes et al. (2019)

Bioconductor version: Development (3.21)

Benchmarking results for experimental and simulated data sets used in Korthauer and Kimes et al. (2019) to compare methods for controlling the false discovery rate.

Author: Stephanie Hicks [aut, cre] ORCID: 0000-0002-7858-0231 , Keegan Korthauer [aut] ORCID: 0000-0002-4565-1654 , Patrick Kimes [aut] ORCID: 0000-0001-6819-9077

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("benchmarkfdrData2019")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("benchmarkfdrData2019")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("benchmarkfdrData2019")

Exploring and updating FDR benchmarking results	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SingleCellData
Version	1.21.0
License	MIT + file LICENSE
Depends	R (>= 3.6.0), SummarizedExperiment, ExperimentHub
Imports	utils
System Requirements
URL
Bug Reports	https://github.com/stephaniehicks/benchmarkfdrData2019/issues

Suggests	rmarkdown, knitr, BiocStyle, testthat, SummarizedBenchmark, dplyr, ggplot2, rlang
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	benchmarkfdrData2019_1.21.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/benchmarkfdrData2019
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/benchmarkfdrData2019
Package Short Url	https://bioconductor.org/packages/benchmarkfdrData2019/
Package Downloads Report	Download Stats