lumiBarnes
This is the development version of lumiBarnes; for the stable release version, see lumiBarnes.
Barnes Benchmark Illumina Tissues Titration Data
Bioconductor version: Development (3.21)
The Barnes benchmark dataset can be used to evaluate the algorithms for Illumina microarrays. It measured a titration series of two human tissues, blood and placenta, and includes six samples with the titration ratio of blood and placenta as 100:0, 95:5, 75:25, 50:50, 25:75 and 0:100. The samples were hybridized on HumanRef-8 BeadChip (Illumina, Inc) in duplicate. The data is loaded as an LumiBatch Object (see documents in the lumi package).
Author: Pan Du
Maintainer: Pan Du <dupan at northwestern.edu>
citation("lumiBarnes")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("lumiBarnes")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ChipOnChipData, ExperimentData, MicroarrayData, Tissue |
| Version | 1.47.0 |
| License | LGPL |
| Depends | R (>= 2.0), Biobase(>= 2.5.5), lumi(>= 1.1.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | arrayMvout, lumi |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | lumiBarnes_1.47.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/lumiBarnes |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/lumiBarnes |
| Package Short Url | https://bioconductor.org/packages/lumiBarnes/ |
| Package Downloads Report | Download Stats |