CellMapper
Predict genes expressed selectively in specific cell types
Bioconductor version: Release (3.20)
Infers cell type-specific expression based on co-expression similarity with known cell type marker genes. Can make accurate predictions using publicly available expression data, even when a cell type has not been isolated before.
Author: Brad Nelms
Maintainer: Brad Nelms <bnelms.research at gmail.com>
Citation (from within R, enter
citation("CellMapper")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CellMapper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CellMapper")| CellMapper Vignette | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, Microarray, Software |
| Version | 1.32.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
| License | Artistic-2.0 |
| Depends | S4Vectors, methods |
| Imports | stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | CellMapperData, Biobase, HumanAffyData, ALL, BiocStyle, ExperimentHub |
| Linking To | |
| Enhances | |
| Depends On Me | CellMapperData |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CellMapper_1.32.0.tar.gz |
| Windows Binary (x86_64) | CellMapper_1.32.0.zip (64-bit only) |
| macOS Binary (x86_64) | CellMapper_1.32.0.tgz |
| macOS Binary (arm64) | CellMapper_1.32.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CellMapper |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CellMapper |
| Bioc Package Browser | https://code.bioconductor.org/browse/CellMapper/ |
| Package Short Url | https://bioconductor.org/packages/CellMapper/ |
| Package Downloads Report | Download Stats |