ExiMiR
R functions for the normalization of Exiqon miRNA array data
Bioconductor version: Release (3.20)
This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.
Author: Sylvain Gubian <DL.RSupport at pmi.com>, Alain Sewer <DL.RSupport at pmi.com>, PMP SA
Maintainer: Sylvain Gubian <DL.RSupport at pmi.com>
citation("ExiMiR")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExiMiR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExiMiR")| Description of ExiMiR | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GeneExpression, Microarray, OneChannel, Preprocessing, Software, Transcription, TwoChannel |
| Version | 2.48.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.10), Biobase(>= 2.5.5), affy(>= 1.26.1), limma |
| Imports | affyio(>= 1.13.3), Biobase(>= 2.5.5), preprocessCore(>= 1.10.0) |
| System Requirements | |
| URL |
See More
| Suggests | mirna10cdf |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ExiMiR_2.48.0.tar.gz |
| Windows Binary (x86_64) | ExiMiR_2.48.0.zip (64-bit only) |
| macOS Binary (x86_64) | ExiMiR_2.48.0.tgz |
| macOS Binary (arm64) | ExiMiR_2.48.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ExiMiR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ExiMiR |
| Bioc Package Browser | https://code.bioconductor.org/browse/ExiMiR/ |
| Package Short Url | https://bioconductor.org/packages/ExiMiR/ |
| Package Downloads Report | Download Stats |