Heatplus
Heatmaps with row and/or column covariates and colored clusters
Bioconductor version: Release (3.20)
Display a rectangular heatmap (intensity plot) of a data matrix. By default, both samples (columns) and features (row) of the matrix are sorted according to a hierarchical clustering, and the corresponding dendrogram is plotted. Optionally, panels with additional information about samples and features can be added to the plot.
Author: Alexander Ploner <Alexander.Ploner at ki.se>
Maintainer: Alexander Ploner <Alexander.Ploner at ki.se>
citation("Heatplus")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Heatplus")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Heatplus")| Annotated and regular heatmaps | R Script | |
| Commented package source | R Script | |
| Old functions (deprecated) | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Microarray, Software, Visualization |
| Version | 3.14.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (18.5 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | graphics, grDevices, stats, RColorBrewer |
| System Requirements | |
| URL | https://github.com/alexploner/Heatplus |
| Bug Reports | https://github.com/alexploner/Heatplus/issues |
See More
| Suggests | Biobase, hgu95av2.db, limma |
| Linking To | |
| Enhances | |
| Depends On Me | phenoTest, tRanslatome, heatmapFlex |
| Imports Me | |
| Suggests Me | mtbls2, RforProteomics |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Heatplus_3.14.0.tar.gz |
| Windows Binary (x86_64) | Heatplus_3.14.0.zip (64-bit only) |
| macOS Binary (x86_64) | Heatplus_3.14.0.tgz |
| macOS Binary (arm64) | Heatplus_3.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Heatplus |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Heatplus |
| Bioc Package Browser | https://code.bioconductor.org/browse/Heatplus/ |
| Package Short Url | https://bioconductor.org/packages/Heatplus/ |
| Package Downloads Report | Download Stats |