KEGGREST

Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)

Bioconductor version: Release (3.20)

A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. Only for academic use by academic users belonging to academic institutions (see ). Note that KEGGREST is based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

Author: Dan Tenenbaum [aut], Bioconductor Package Maintainer [aut, cre], Martin Morgan [ctb], Kozo Nishida [ctb], Marcel Ramos [ctb], Kristina Riemer [ctb], Lori Shepherd [ctb], Jeremy Volkening [ctb]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("KEGGREST")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("KEGGREST")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGREST")

Accessing the KEGG REST API	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, KEGG, Pathways, Software, ThirdPartyClient
Version	1.46.0
In Bioconductor since	BioC 2.12 (R-3.0) (11.5 years)
License	Artistic-2.0
Depends	R (>= 3.5.0)
Imports	methods, httr, png, Biostrings
System Requirements
URL	https://bioconductor.org/packages/KEGGREST
Bug Reports	https://github.com/Bioconductor/KEGGREST/issues

Suggests	RUnit, BiocGenerics, BiocStyle, knitr, markdown
Linking To
Enhances
Depends On Me	ROntoTools, Hiiragi2013
Imports Me	ADAM, adSplit, AnnotationDbi, attract, BiocSet, ChIPpeakAnno, CNEr, EnrichmentBrowser, famat, FELLA, funOmics, gage, ginmappeR, MetaboSignal, MWASTools, PADOG, pairkat, pathview, SBGNview, SMITE, transomics2cytoscape, YAPSA
Suggests Me	Category, categoryCompare, gatom, GenomicRanges, globaltest, iSEEu, MetMashR, MLP, padma, rGREAT, RTopper, SomaScan.db, CALANGO, ggpicrust2, maGUI, phoenics, ReporterScore, scDiffCom
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	KEGGREST_1.46.0.tar.gz
Windows Binary (x86_64)	KEGGREST_1.46.0.zip (64-bit only)
macOS Binary (x86_64)	KEGGREST_1.46.0.tgz
macOS Binary (arm64)	KEGGREST_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/KEGGREST
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/KEGGREST
Bioc Package Browser	https://code.bioconductor.org/browse/KEGGREST/
Package Short Url	https://bioconductor.org/packages/KEGGREST/
Package Downloads Report	Download Stats