MethTargetedNGS
Perform Methylation Analysis on Next Generation Sequencing Data
Bioconductor version: Release (3.20)
Perform step by step methylation analysis of Next Generation Sequencing data.
Author: Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri
Maintainer: Muhammad Ahmer Jamil <engr.ahmerjamil at gmail.com>
Citation (from within R, enter
citation("MethTargetedNGS")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MethTargetedNGS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MethTargetedNGS")| Introduction to MethTargetedNGS | R Script | |
| Reference Manual |
Details
| biocViews | Alignment, DataImport, Genetics, ResearchField, SequenceMatching, Sequencing, Software |
| Version | 1.38.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.1.2), stringr, seqinr, gplots, Biostrings, pwalign |
| Imports | utils, graphics, stats |
| System Requirements | HMMER3 |
| URL |
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MethTargetedNGS_1.38.0.tar.gz |
| Windows Binary (x86_64) | MethTargetedNGS_1.38.0.zip (64-bit only) |
| macOS Binary (x86_64) | MethTargetedNGS_1.38.0.tgz |
| macOS Binary (arm64) | MethTargetedNGS_1.38.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MethTargetedNGS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MethTargetedNGS |
| Bioc Package Browser | https://code.bioconductor.org/browse/MethTargetedNGS/ |
| Package Short Url | https://bioconductor.org/packages/MethTargetedNGS/ |
| Package Downloads Report | Download Stats |