TnT

Interactive Visualization for Genomic Features

Bioconductor version: Release (3.20)

A R interface to the TnT javascript library (https://github.com/ tntvis) to provide interactive and flexible visualization of track-based genomic data.

Author: Jialin Ma [cre, aut], Miguel Pignatelli [aut], Toby Hocking [aut]

Maintainer: Jialin Ma <marlin- at gmx.cn>

Citation (from within R, enter citation("TnT")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TnT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TnT")

Introduction to TnT	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software, Visualization
Version	1.28.0
In Bioconductor since	BioC 3.6 (R-3.4) (7 years)
License	AGPL-3
Depends	R (>= 3.4), GenomicRanges
Imports	methods, stats, utils, grDevices, htmlwidgets, jsonlite, data.table, Biobase, GenomeInfoDb, IRanges, S4Vectors, knitr
System Requirements
URL	https://github.com/Marlin-Na/TnT
Bug Reports	https://github.com/Marlin-Na/TnT/issues

Suggests	GenomicFeatures, shiny, BiocManager, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TnT_1.28.0.tar.gz
Windows Binary (x86_64)	TnT_1.28.0.zip
macOS Binary (x86_64)	TnT_1.28.0.tgz
macOS Binary (arm64)	TnT_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TnT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TnT
Bioc Package Browser	https://code.bioconductor.org/browse/TnT/
Package Short Url	https://bioconductor.org/packages/TnT/
Package Downloads Report	Download Stats