TransView

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

Bioconductor version: Release (3.20)

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

Citation (from within R, enter citation("TransView")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TransView")

For older versions of R, please refer to the appropriate Bioconductor release.

biocViews	ChIPSeq, Clustering, DNAMethylation, DataImport, GeneExpression, ImmunoOncology, MethylSeq, Microarray, MultipleComparison, RNASeq, Sequencing, Software, Transcription, Visualization
Version	1.50.0
In Bioconductor since	BioC 2.11 (R-2.15) (12 years)
License	GPL-3
Depends	methods, GenomicRanges
Imports	BiocGenerics, S4Vectors(>= 0.9.25), IRanges, zlibbioc, gplots
System Requirements	GNU make
URL	http://bioconductor.org/packages/release/bioc/html/TransView.html

Suggests	RUnit, pasillaBamSubset, BiocManager
Linking To	Rhtslib(>= 1.99.1)
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)	TransView_1.50.0.zip (64-bit only)
macOS Binary (x86_64)	TransView_1.50.0.tgz
macOS Binary (arm64)	TransView_1.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TransView
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TransView
Bioc Package Browser	https://code.bioconductor.org/browse/TransView/
Package Short Url	https://bioconductor.org/packages/TransView/
Package Downloads Report	Download Stats