discordant
The Discordant Method: A Novel Approach for Differential Correlation
Bioconductor version: Release (3.20)
Discordant is an R package that identifies pairs of features that correlate differently between phenotypic groups, with application to -omics data sets. Discordant uses a mixture model that “bins” molecular feature pairs based on their type of coexpression or coabbundance. Algorithm is explained further in "Differential Correlation for Sequencing Data"" (Siska et al. 2016).
Author: Charlotte Siska [aut], McGrath Max [aut, cre], Katerina Kechris [aut, cph, ths]
Maintainer: McGrath Max <max.mcgrath at ucdenver.edu>
citation("discordant")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("discordant")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("discordant")| The discordant R Package: A Novel Approach to Differential Correlation | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiologicalQuestion, Genetics, ImmunoOncology, Microarray, RNASeq, Software, StatisticalMethod, mRNAMicroarray |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.1.0) |
| Imports | Rcpp, Biobase, stats, biwt, gtools, MASS, tools, dplyr, methods, utils |
| System Requirements | |
| URL | https://github.com/siskac/discordant |
See More
| Suggests | BiocStyle, knitr, testthat (>= 3.0.0) |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | discordant_1.30.0.tar.gz |
| Windows Binary (x86_64) | discordant_1.30.0.zip |
| macOS Binary (x86_64) | discordant_1.30.0.tgz |
| macOS Binary (arm64) | discordant_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/discordant |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/discordant |
| Bioc Package Browser | https://code.bioconductor.org/browse/discordant/ |
| Package Short Url | https://bioconductor.org/packages/discordant/ |
| Package Downloads Report | Download Stats |