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scTGIF

Cell type annotation for unannotated single-cell RNA-Seq data


Bioconductor version: Release (3.20)

scTGIF connects the cells and the related gene functions without cell type label.

Author: Koki Tsuyuzaki [aut, cre]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Citation (from within R, enter citation("scTGIF")):

Installation

To install this package, start R (version "4.4") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scTGIF")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scTGIF")
scTGIF HTML R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DimensionReduction, GeneExpression, QualityControl, SingleCell, Software
Version 1.20.0
In Bioconductor since BioC 3.10 (R-3.6) (5 years)
License Artistic-2.0
Depends R (>= 3.6.0)
Imports GSEABase, Biobase, SingleCellExperiment, BiocStyle, plotly, tagcloud, rmarkdown, Rcpp, grDevices, graphics, utils, knitr, S4Vectors, SummarizedExperiment, RColorBrewer, nnTensor, methods, scales, msigdbr, schex, tibble, ggplot2, igraph
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scTGIF_1.20.0.tar.gz
Windows Binary (x86_64) scTGIF_1.20.0.zip
macOS Binary (x86_64) scTGIF_1.20.0.tgz
macOS Binary (arm64) scTGIF_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/scTGIF
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scTGIF
Bioc Package Browser https://code.bioconductor.org/browse/scTGIF/
Package Short Url https://bioconductor.org/packages/scTGIF/
Package Downloads Report Download Stats