snifter
R wrapper for the python openTSNE library
Bioconductor version: Release (3.20)
Provides an R wrapper for the implementation of FI-tSNE from the python package openTNSE. See Poličar et al. (2019)
Author: Alan O'Callaghan [aut, cre], Aaron Lun [aut]
Maintainer: Alan O'Callaghan <alan.ocallaghan at outlook.com>
Citation (from within R, enter
citation("snifter")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("snifter")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("snifter")| Introduction to snifter | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DimensionReduction, Sequencing, SingleCell, Software, Visualization |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
| License | GPL-3 |
| Depends | R (>= 4.0.0) |
| Imports | basilisk, reticulate, irlba, stats, assertthat |
| System Requirements | |
| URL | https://bioconductor.org/packages/snifter |
| Bug Reports | https://github.com/Alanocallaghan/snifter/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, ggplot2, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | scater |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | snifter_1.16.0.tar.gz |
| Windows Binary (x86_64) | snifter_1.16.0.zip (64-bit only) |
| macOS Binary (x86_64) | snifter_1.16.0.tgz |
| macOS Binary (arm64) | snifter_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/snifter |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/snifter |
| Bioc Package Browser | https://code.bioconductor.org/browse/snifter/ |
| Package Short Url | https://bioconductor.org/packages/snifter/ |
| Package Downloads Report | Download Stats |