tenXplore

ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics

Bioconductor version: Release (3.20)

Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("tenXplore")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tenXplore")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tenXplore")

tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons	HTML	R Script
Reference Manual	PDF

biocViews	DimensionReduction, ImmunoOncology, PrincipalComponent, SingleCell, Software, Transcriptomics
Version	1.28.0
In Bioconductor since	BioC 3.6 (R-3.4) (7 years)
License	Artistic-2.0
Depends	R (>= 4.0), shiny
Imports	methods, ontoProc(>= 0.99.7), SummarizedExperiment, AnnotationDbi, matrixStats, org.Mm.eg.db, stats, utils, BiocFileCache
System Requirements
URL

Suggests	org.Hs.eg.db, testthat, knitr, rmarkdown, BiocStyle
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Depends On Me
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Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	tenXplore_1.28.0.tar.gz
Windows Binary (x86_64)	tenXplore_1.28.0.zip
macOS Binary (x86_64)	tenXplore_1.28.0.tgz
macOS Binary (arm64)	tenXplore_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tenXplore
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tenXplore
Bioc Package Browser	https://code.bioconductor.org/browse/tenXplore/
Package Short Url	https://bioconductor.org/packages/tenXplore/
Package Downloads Report	Download Stats