AHEnsDbs
EnsDbs for AnnotationHub
Bioconductor version: Release (3.20)
Supplies AnnotationHub with EnsDb Ensembl-based annotation databases for all species. EnsDb SQLite databases are generated separately from Ensembl MySQL databases using functions from the ensembldb package employing the Ensembl Perl API.
Author: Johannes Rainer
Maintainer: Johannes Rainer <johannes.rainer at eurac.edu>
Citation (from within R, enter
citation("AHEnsDbs")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AHEnsDbs")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AHEnsDbs")| Provide EnsDb databases for AnnotationHub | HTML | R Script |
| Reference Manual |
Details
| biocViews | AnnotationData, AnnotationHubSoftware, Coverage, DataImport, Sequencing |
| Version | 1.6.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.4), methods, ensembldb(>= 1.99.10) |
| Imports | AnnotationHubData(>= 1.5.24) |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, AnnotationHub(>= 2.7.13), rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AHEnsDbs_1.6.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/AHEnsDbs/ |
| Package Downloads Report | Download Stats |