Package	Download_score
a4	83
a4Base	136
a4Classif	112
a4Core	159
a4Preproc	176
a4Reporting	114
ABAEnrichment	11
ABarray	70
abseqR	53
ABSSeq	113
acde	62
ACE	89
aCGH	210
ACME	82
ADaCGH2	72
ADAM	111
ADAMgui	90
adaptest	4
adductomicsR	55
ADImpute	69
adSplit	66
adverSCarial	24
AffiXcan	56
affxparser	1608
affy	8447
affycomp	93
AffyCompatible	24
affyContam	96
affycoretools	394
AffyExpress	13
affyILM	64
affyio	8309
affylmGUI	80
affyPara	16
affypdnn	13
affyPLM	1252
affyQCReport	18
AffyRNADegradation	58
AffyTiling	7
AGDEX	67
aggregateBioVar	64
Agi4x44PreProcess	4
agilp	89
AgiMicroRna	134
AHMassBank	47
AIMS	430
airpart	53
alabaster	42
alabaster.base	287
alabaster.bumpy	79
alabaster.files	27
alabaster.mae	88
alabaster.matrix	247
alabaster.ranges	231
alabaster.sce	127
alabaster.schemas	276
alabaster.se	237
alabaster.spatial	79
alabaster.string	95
alabaster.vcf	81
ALDEx2	1172
alevinQC	79
AllelicImbalance	101
AlphaBeta	52
AlphaMissenseR	4
alpine	50
ALPS	4
AlpsNMR	60
alsace	15
altcdfenvs	111
AMARETTO	119
AMOUNTAIN	89
amplican	76
ampliQueso	11
AnalysisPageServer	7
anamiR	8
Anaquin	58
ANCOMBC	1203
AneuFinder	87
ANF	47
animalcules	110
annaffy	271
AnnBuilder	1
annmap	113
annotate	18110
AnnotationDbi	36423
AnnotationFilter	10140
AnnotationForge	2518
AnnotationFuncs	17
AnnotationHub	10913
AnnotationHubData	371
annotationTools	126
annotatr	467
anota	83
anota2seq	74
antiProfiles	59
AnVIL	603
AnVILBilling	47
AnVILPublish	48
AnVILWorkflow	37
APAlyzer	66
apComplex	62
apeglm	3387
APL	113
applera	1
appreci8R	98
aroma.light	1962
ArrayExpress	422
ArrayExpressHTS	16
arrayMagic	2
arrayMvout	57
arrayQCplot	1
arrayQuality	95
arrayQualityMetrics	509
ArrayTools	16
ArrayTV	14
ARRmNormalization	54
artMS	75
ASAFE	46
ASEB	54
ASGSCA	55
ASICS	78
asmn	3
ASpediaFI	7
ASpli	102
AssessORF	51
ASSET	103
ASSIGN	104
ASURAT	59
ATACCoGAPS	45
ATACseqQC	343
ATACseqTFEA	58
atena	111
AtlasRDF	7
atSNP	66
attract	69
AUCell	2132
autonomics	52
Autotuner	5
AWFisher	54
awst	53
BaalChIP	62
BAC	17
bacon	101
BADER	65
BadRegionFinder	54
BAGS	56
ballgown	648
bambu	272
bamsignals	1127
BANDITS	110
bandle	55
Banksy	5
banocc	66
barcodetrackR	50
basecallQC	65
BaseSpaceR	60
Basic4Cseq	61
BASiCS	164
BASiCStan	51
BasicSTARRseq	58
basilisk	4703
basilisk.utils	4288
batchelor	3794
BatchQC	103
BayesKnockdown	49
BayesPeak	15
BayesSpace	220
bayNorm	78
baySeq	405
BBCAnalyzer	55
BCRANK	66
bcSeq	54
BDMMAcorrect	36
beachmat	15067
beachmat.hdf5	38
beadarray	714
beadarraySNP	57
BeadDataPackR	674
BeadExplorer	1
BEARscc	50
BEAT	57
BEclear	65
beer	56
benchdamic	79
BERT	4
betaHMM	3
betr	9
bettr	1
BG2	39
bgafun	12
BgeeCall	50
BgeeDB	123
BGmix	28
bgx	61
BHC	86
BicARE	134
BiFET	53
BiGGR	65
bigmelon	58
bigmemoryExtras	14
bigPint	42
bim	1
BindingSiteFinder	57
bioassayR	71
Biobase	46691
biobroom	180
biobtreeR	48
bioCancer	73
BioCartaImage	21
BiocBaseUtils	5146
BiocBook	26
BiocCaseStudies	14
BiocCheck	1609
biocDatasets	1
BiocDockerManager	24
BiocFHIR	43
BiocFileCache	25564
BiocGenerics	54875
biocGraph	162
BiocHail	35
BiocHubsShiny	77
BiocInstaller	504
BiocIO	18960
BiocNeighbors	10085
BiocOncoTK	73
BioCor	82
BiocParallel	41722
BiocPkgTools	160
biocroxytest	2
BiocSet	247
BiocSingular	11775
BiocSklearn	69
BiocStyle	6289
biocthis	212
BiocVersion	57963
biocViews	4227
BiocWorkflowTools	179
biodb	192
biodbChebi	80
biodbExpasy	44
biodbHmdb	55
biodbKegg	63
biodbLipidmaps	44
biodbMirbase	37
biodbNcbi	46
biodbNci	41
biodbUniprot	47
bioDist	255
biomaRt	23986
BioMedR	2
biomformat	5374
BioMM	29
BioMVCClass	56
biomvRCNS	50
BioNAR	57
BioNERO	246
BioNet	275
BioNetStat	75
BioQC	113
BioSeqClass	15
biosigner	82
Biostrings	44551
biosvd	12
BioTIP	71
biotmle	62
biovizBase	5498
BiRewire	114
birta	16
birte	6
biscuiteer	62
BiSeq	142
BitSeq	23
blacksheepr	54
blima	52
BLMA	70
BloodGen3Module	120
bluster	4788
bnbc	110
bnem	55
BOBaFIT	58
borealis	47
BPRMeth	88
BRAIN	107
brainflowprobes	52
brainImageR	2
BrainSABER	7
BrainStars	13
branchpointer	69
breakpointR	62
brendaDb	45
BRGenomics	155
bridge	17
BridgeDbR	76
BrowserViz	169
BrowserVizDemo	2
BSgenome	13333
BSgenomeForge	85
bsseq	1422
BubbleTree	67
BufferedMatrix	88
BufferedMatrixMethods	55
bugsigdbr	164
BUMHMM	48
bumphunter	2697
BumpyMatrix	547
BUS	56
BUScorrect	45
BUSpaRse	191
BUSseq	45
CaDrA	24
CAEN	40
CAFE	70
CAGEfightR	151
cageminer	53
CAGEr	113
CALIB	13
calm	41
CAMERA	482
CAMTHC	3
CaMutQC	1
canceR	84
cancerclass	75
CancerInSilico	18
CancerMutationAnalysis	14
CancerSubtypes	122
CAnD	9
caOmicsV	7
cardelino	58
Cardinal	161
CardinalIO	97
CARNIVAL	153
casper	58
CATALYST	465
Category	1931
categoryCompare	66
CausalR	60
cbaf	60
CBEA	103
cBioPortalData	445
CBNplot	128
cbpManager	50
ccfindR	89
ccImpute	45
ccmap	75
CCPlotR	30
CCPROMISE	60
ccrepe	86
CDI	22
celaref	67
celda	640
CellaRepertorium	56
CellBarcode	59
cellbaseR	68
CellBench	127
cellGrowth	12
cellHTS	10
cellHTS2	205
CelliD	247
cellity	62
CellMapper	57
cellmigRation	43
CellMixS	78
CellNOptR	191
cellscape	37
CellScore	47
CellTrails	52
cellTree	14
cellxgenedp	99
CEMiTool	136
censcyt	60
Cepo	168
ceRNAnetsim	43
CeTF	78
CexoR	59
CFAssay	48
cfdnakit	35
cfDNAPro	53
cfTools	40
CGEN	60
CGHbase	444
CGHcall	406
cghMCR	65
CGHnormaliter	64
CGHregions	77
ChAMP	569
CHARGE	5
charm	14
ChemmineOB	338
ChemmineR	909
CHETAH	93
ChIC	20
Chicago	90
chihaya	52
chimera	17
chimeraviz	106
ChIPanalyser	50
ChIPComp	59
chipenrich	157
ChIPexoQual	61
ChIPpeakAnno	984
ChIPQC	331
ChIPseeker	1778
chipseq	604
ChIPseqR	83
ChIPSeqSpike	8
ChIPsim	85
ChIPXpress	96
chopsticks	87
chroGPS	13
chromDraw	50
ChromHeatMap	123
ChromoViz	1
chromPlot	131
ChromSCape	62
chromstaR	87
chromswitch	29
chromVAR	1089
CHRONOS	54
cicero	212
CIMICE	48
CINdex	68
circRNAprofiler	68
CircSeqAlignTk	49
cisPath	54
CiteFuse	90
ClassifyR	278
cleanUpdTSeq	101
cleaver	191
clevRvis	45
clippda	57
clipper	98
cliProfiler	45
cliqueMS	110
Clomial	50
Clonality	32
clonotypeR	18
clst	90
clstutils	58
CluMSID	62
ClustAll	1
clustComp	54
clusterExperiment	350
ClusterFoldSimilarity	3
ClusterJudge	51
clusterProfiler	17139
clusterSeq	35
ClusterSignificance	51
clusterStab	77
clustifyr	130
ClustIRR	22
CMA	111
cmapR	396
CNAnorm	61
CNEr	3138
cn.farms	61
cn.mops	269
CNORdt	62
CNORfeeder	66
CNORfuzzy	63
CNORode	90
CNPBayes	6
CNTools	129
CNVfilteR	56
CNVgears	29
cnvGSA	61
CNViz	50
CNVMetrics	46
CNVPanelizer	60
CNVRanger	123
CNVrd2	59
CNVtools	11
cobindR	12
CoCiteStats	51
COCOA	65
codelink	70
CODEX	102
coexnet	13
CoGAPS	244
cogena	82
cogeqc	64
Cogito	43
coGPS	52
COHCAP	62
cola	123
comapr	58
combi	54
coMET	93
coMethDMR	51
compartmap	36
COMPASS	72
compcodeR	81
compEpiTools	67
CompGO	12
ComplexHeatmap	13719
CompoundDb	350
ComPrAn	38
compSPOT	18
conclus	6
concordexR	63
condcomp	2
condiments	84
CONFESS	57
consensus	47
ConsensusClusterPlus	2958
consensusDE	64
consensusOV	108
consensusSeekeR	100
consICA	104
CONSTANd	45
contiBAIT	54
conumee	152
convert	145
copa	54
COPDSexualDimorphism	2
copynumber	151
CopyNumber450k	6
CopyNumberPlots	153
CopywriteR	24
coRdon	166
CoRegFlux	2
CoRegNet	49
CoreGx	367
Cormotif	53
CorMut	12
coRNAi	10
corral	72
CORREP	55
coseq	109
CoSIA	44
cosmiq	54
cosmo	2
cosmoGUI	2
cosmosR	68
COSNet	52
COTAN	76
CountClust	11
countsimQC	136
covEB	47
CoverageView	64
covRNA	52
cpvSNP	54
cqn	279
CRImage	76
CRISPRball	3
crisprBase	156
crisprBowtie	148
crisprBwa	57
crisprDesign	128
crisprScore	162
CRISPRseek	158
crisprseekplus	30
crisprShiny	2
CrispRVariants	136
crisprVerse	64
crisprViz	113
crlmm	238
CrossICC	2
crossmeta	149
CSAR	77
csaw	585
csdR	43
CSSP	32
CSSQ	45
ctc	281
CTdata	42
CTDquerier	50
CTexploreR	3
ctgGEM	4
cTRAP	57
ctsGE	52
CTSV	48
cummeRbund	236
CuratedAtlasQueryR	33
customCMPdb	49
customProDB	79
CVE	5
cyanoFilter	48
cycle	57
cydar	81
cypress	1
CytoDx	63
cytofast	5
cytofkit	25
CyTOFpower	53
cytofQC	49
CytoGLMM	92
cytoKernel	41
cytolib	2789
cytomapper	311
CytoMDS	1
cytoMEM	88
CytoML	470
CytoPipeline	84
CytoPipelineGUI	19
CytoTree	16
cytoviewer	87
dada2	2168
dagLogo	78
daMA	54
DAMEfinder	53
DaMiRseq	114
DAPAR	126
dar	3
DART	60
DASC	1
DASiR	7
dasper	21
DAVIDQuery	6
DBChIP	15
dcanr	112
DCATS	29
dce	66
dcGSA	48
DChIPRep	8
ddCt	89
ddgraph	9
ddPCRclust	67
dearseq	165
debCAM	60
debrowser	175
DECIPHER	2741
deco	9
DEComplexDisease	10
decompTumor2Sig	124
DeconRNASeq	214
decontam	1605
decontX	79
deconvR	63
decoupleR	968
DEDS	13
DeepBlueR	50
DeepPINCS	78
deepSNV	160
DEFormats	254
DegCre	1
DegNorm	54
DEGraph	66
DEGreport	572
DEGseq	160
DelayedArray	42706
DelayedDataFrame	59
DelayedMatrixStats	15979
DelayedRandomArray	83
DelayedTensor	45
DELocal	44
deltaCaptureC	49
deltaGseg	51
DeMAND	48
DeMixT	93
demuxmix	205
demuxSNP	32
densvis	3274
DEP	478
DepecheR	149
DepInfeR	41
DeProViR	2
DEqMS	218
derfinder	580
derfinderHelper	578
derfinderPlot	147
DEScan2	61
DESeq	227
DESeq2	21212
DEsingle	248
DESpace	49
destiny	687
DEsubs	56
DEWSeq	56
DExMA	59
DEXSeq	1479
dexus	16
DFP	51
DIAlignR	53
DiffBind	1038
diffcoexp	177
diffcyt	343
DifferentialRegulation	49
diffGeneAnalysis	50
diffHic	105
DiffLogo	61
diffloop	30
diffuStats	62
diffUTR	46
diggit	51
Dino	52
dinoR	2
Director	41
dir.expiry	4197
DirichletMultinomial	4412
discordant	79
DiscoRhythm	58
distinct	210
dittoSeq	1335
divergence	40
dks	47
DMCFB	39
DMCHMM	49
DMRcaller	77
DMRcate	831
DMRforPairs	33
DMRScan	45
dmrseq	195
DNABarcodeCompatibility	42
DNABarcodes	167
DNAcopy	5247
DNAfusion	44
DNaseR	4
DNAshapeR	72
domainsignatures	10
DominoEffect	52
doppelgangR	117
DOQTL	9
Doscheda	56
DOSE	16749
doseR	43
doubletrouble	56
dpeak	26
drawProteins	181
dreamlet	33
DRIMSeq	312
DriverNet	55
DropletUtils	2609
drugTargetInteractions	55
DrugVsDisease	117
dSimer	6
DSS	966
dStruct	42
DTA	85
dualKS	15
Dune	44
DupChecker	5
dupRadar	102
dyebias	56
DynDoc	1247
easier	133
EasyCellType	49
easylift	24
EasyqpcR	15
easyreporting	48
easyRNASeq	176
EBarrays	221
EBcoexpress	73
EBImage	2667
EBSEA	51
EBSeq	412
EBSeqHMM	54
ecolitk	55
EDASeq	1777
edd	2
EDDA	15
edge	96
edgeR	22678
EDIRquery	35
eds	335
eegc	80
EGAD	60
EGSEA	137
eiR	62
eisa	14
eisaR	100
ELBOW	13
ELMER	174
EMDomics	64
EmpiricalBrownsMethod	126
ENCODExplorer	7
EnhancedVolcano	4166
enhancerHomologSearch	53
EnMCB	46
ENmix	199
EnrichedHeatmap	551
EnrichmentBrowser	553
enrichplot	16953
enrichTF	77
enrichViewNet	32
ensembldb	9833
ensemblVEP	163
ENVISIONQuery	12
epialleleR	53
EpiCompare	52
epidecodeR	42
EpiDISH	558
epigenomix	57
epigraHMM	51
epihet	9
EpiMix	42
epimutacions	58
epiNEM	139
epistack	48
epistasisGA	38
EpiTxDb	81
epivizr	115
epivizrChart	52
epivizrData	126
epivizrServer	144
epivizrStandalone	61
erccdashboard	62
erma	94
ERSSA	49
esATAC	93
escape	323
escheR	104
esetVis	75
eudysbiome	43
evaluomeR	51
EventPointer	61
EWCE	137
ExCluster	43
ExiMiR	55
exomeCopy	310
exomePeak	19
exomePeak2	101
exonmap	2
ExperimentHub	7350
ExperimentHubData	297
ExperimentSubset	51
explorase	12
ExploreModelMatrix	147
ExpressionAtlas	158
ExpressionView	14
exprExternal	0
externalVector	2
extraChIPs	60
fabia	175
facopy	4
factDesign	53
factR	49
faers	3
FamAgg	70
famat	55
farms	49
fastLiquidAssociation	54
FastqCleaner	81
fastreeR	65
fastseg	743
fbat	2
FCBF	53
fCCAC	51
fCI	47
fcoex	80
fcScan	50
fdrame	49
FEAST	109
FeatSeekR	41
fedup	46
FELLA	125
FEM	22
fenr	24
ffpe	68
fgga	44
FGNet	111
fgsea	16241
FilterFFPE	43
FindIT2	52
FindMyFriends	10
FISHalyseR	47
fishpond	278
FitHiC	59
flagme	55
FLAMES	73
flipflop	12
flowAI	557
flowBeads	58
flowBin	66
flowcatchR	54
flowCHIC	57
flowCL	18
flowClean	209
flowClust	841
flowCore	2841
flowCut	98
flowCyBar	51
flowDensity	261
flowFit	14
flowFlowJo	5
flowFP	152
flowGate	65
flowGraph	47
flowMap	47
flowMatch	66
flowMeans	158
flowMerge	134
flowPeaks	175
flowPhyto	4
flowPloidy	61
flowPlots	52
flowQ	8
flowQB	15
FlowRepositoryR	8
FlowSOM	1077
flowSpecs	65
flowSpy	3
flowStats	526
flowTime	60
flowTrans	79
flowType	15
flowUtils	42
flowViz	1055
flowVS	98
flowWorkspace	1290
fmcsR	258
fmrs	114
fobitools	46
focalCall	5
FoldGO	33
FourCSeq	10
FRASER	106
frenchFISH	38
FRGEpistasis	53
frma	149
frmaTools	69
FScanR	23
FunChIP	61
FunciSNP	13
funtooNorm	58
FuseSOM	48
GA4GHclient	106
GA4GHshiny	61
gaga	99
gage	811
gaggle	50
gaia	27
GAPGOM	7
GAprediction	47
garfield	51
GARS	54
GateFinder	55
gatom	26
gaucho	10
GBScleanR	39
gcapc	54
gcatest	48
gCMAP	15
gCMAPWeb	12
gCrisprTools	56
gcrma	1395
GCSConnection	4
GCSFilesystem	5
GCSscore	27
GDCRNATools	292
gDNAx	38
gDR	26
gDRcore	69
gDRimport	71
gDRstyle	56
gDRutils	91
GDSArray	125
gdsfmt	2094
geecc	6
GEM	53
gemini	47
gemma.R	53
genArise	51
genbankr	131
gene2pathway	2
GeneAccord	9
GeneAnswers	24
geneAttribution	49
GeneBreak	67
geneClassifiers	48
GENE.E	11
GeneExpressionSignature	64
genefilter	12982
genefu	419
GeneGA	40
GeneGeneInteR	51
GeneGroupAnalysis	2
GeneMeta	97
GeneNetworkBuilder	71
GeneOverlap	405
geneplast	89
geneplotter	7694
GeneR	3
geneRecommender	51
GeneRegionScan	60
GeneRfold	1
geneRxCluster	52
GeneSelectMMD	102
GeneSelector	13
GENESIS	339
GeneSpring	2
GeneStructureTools	78
geNetClassifier	146
GeneticsBase	2
GeneticsDesign	12
GeneticsPed	98
GeneTonic	255
GeneTraffic	2
GeneTS	1
geneXtendeR	106
GENIE3	1167
genoCN	52
GenoGAM	9
genomation	625
GenomAutomorphism	37
GenomeBase	0
GenomeGraphs	17
GenomeInfoDb	56036
genomeIntervals	178
genomes	62
GenomicAlignments	23522
GenomicDataCommons	1207
GenomicDistributions	86
GenomicFeatures	19716
GenomicFiles	1289
genomicInstability	45
GenomicInteractionNodes	44
GenomicInteractions	345
GenomicOZone	57
GenomicPlot	39
GenomicRanges	41289
GenomicScores	636
GenomicSuperSignature	51
GenomicTuples	47
Genominator	15
genoset	22
genotypeeval	15
GenoView	1
genphen	8
GenProSeq	37
GenRank	5
GenVisR	293
GeoDiff	75
GEOexplorer	57
GEOfastq	60
GEOmetadb	228
GeomxTools	397
GEOquery	8968
GEOsearch	3
GEOsubmission	53
GeoTcgaData	60
gep2pep	55
gespeR	82
getDEE2	44
geva	39
GEWIST	46
gff3Plotter	1
gg4way	23
GGBase	16
ggbio	2144
ggcyto	907
ggkegg	141
ggmanh	106
ggmsa	496
GGPA	42
ggsc	31
ggspavis	130
GGtools	18
ggtree	19782
ggtreeDendro	56
ggtreeExtra	996
GIGSEA	42
ginmappeR	1
girafe	90
GISPA	49
GLAD	230
GladiaTOX	42
Glimma	1234
glmGamPoi	3722
glmSparseNet	139
GlobalAncova	985
globalSeq	49
globaltest	1717
GloScope	20
gmapR	162
GmicR	64
gmoviz	48
GMRP	49
GNET2	49
GNOSIS	28
goCluster	0
GOexpress	85
GOfuncR	286
GOFunction	14
GoogleGenomics	5
GOpro	116
goProfiles	122
GOSemSim	16394
goseq	1214
GOSim	127
goSorensen	49
goSTAG	57
GOstats	1743
GOsummaries	60
GOTHiC	86
goTools	62
GPA	47
gpart	15
gpls	164
gprege	13
gpuMagic	48
gQTLBase	11
gQTLstats	9
GrafGen	1
gramm4R	3
GRaNIE	128
granulator	115
graper	45
graph	18301
GraphAlignment	53
GraphAT	54
graphite	2930
GraphPAC	98
GRENITS	52
GreyListChIP	961
GRmetrics	80
groHMM	66
GRridge	16
GSALightning	49
GSAR	85
GSCA	56
gscreend	44
GSEABase	8515
GSEABenchmarkeR	78
GSEAlm	75
GSEAmining	62
gsean	58
GSgalgoR	43
GSReg	59
GSRI	58
GSVA	5800
gtrellis	127
GUIDEseq	74
Guitar	135
Gviz	3899
GWAS.BAYES	47
gwascat	600
GWASTools	605
gwasurvivr	79
GWENA	174
gypsum	78
h5vc	77
hapFabia	53
Harman	165
HarmonizR	31
Harshlight	67
hca	61
HCABrowser	4
HCAExplorer	2
HCAMatrixBrowser	2
HCsnip	10
HDF5Array	12420
HDTD	45
heatmaps	242
Heatplus	398
HelloRanges	131
HELP	54
HEM	51
hermes	91
HERON	22
Herper	156
hexbin	21
HGC	58
hiAnnotator	105
HIBAG	124
HiCBricks	146
HiCcompare	287
HiCDCPlus	73
HiCDOC	102
HiCExperiment	128
HiContacts	96
HiCool	58
hicrep	10
hicVennDiagram	24
hierGWAS	53
hierinf	41
HilbertCurve	80
HilbertVis	171
HilbertVisGUI	35
HiLDA	66
hipathia	124
HIPPO	45
hiReadsProcessor	55
HIREewas	46
HiTC	134
hmdbQuery	69
HMMcopy	262
hoodscanR	28
hopach	306
HPAanalyze	118
hpar	275
HPAStainR	18
HPiP	46
HTqPCR	170
HTSanalyzeR	15
HTSeqGenie	55
htSeqTools	14
HTSFilter	224
HubPub	110
HumanTranscriptomeCompendium	51
hummingbird	43
HybridExpress	1
HybridMTest	127
hypeR	68
hyperdraw	110
hypergraph	156
iASeq	48
iasva	47
iBBiG	120
ibh	56
iBMQ	45
iCARE	105
Icens	439
icetea	50
iCheck	51
iChip	50
iClusterPlus	327
iCNV	50
iCOBRA	165
ideal	115
IdeoViz	65
idiogram	55
IdMappingAnalysis	11
IdMappingRetrieval	13
idpr	63
idr2d	49
IFAA	47
iFlow	2
iGC	47
IgGeneUsage	44
igvR	105
igvShiny	3
IHW	713
illuminaio	2909
ILoReg	41
imageHTS	22
IMAS	55
imcRtools	183
Imetagene	7
IMMAN	46
ImmuneSpaceR	65
immunoClust	61
immunotation	46
IMPCdata	45
ImpulseDE	5
ImpulseDE2	11
impute	10300
INDEED	42
iNETgrate	33
infercnv	1055
infinityFlow	63
Informeasure	35
InPAS	55
INPower	53
inSilicoDb	11
inSilicoMerging	13
INSPEcT	66
INTACT	42
InTAD	49
intansv	77
interacCircos	56
InteractionSet	1846
InteractiveComplexHeatmap	368
interactiveDisplay	99
interactiveDisplayBase	10273
InterCellar	74
IntEREst	64
InterMineR	61
IntOMICS	39
IntramiRExploreR	45
inveRsion	15
IONiseR	67
iontree	10
iPAC	125
iPath	41
ipdDb	101
IPO	118
IPPD	12
IRanges	50252
IRISFGM	81
IrisSpatialFeatures	2
ISAnalytics	51
iSEE	455
iSEEde	34
iSEEfier	1
iSEEhex	140
iSEEhub	102
iSEEindex	32
iSEEpathways	28
iSEEu	107
iSeq	50
ISLET	44
iSNetwork	1
isobar	79
IsoBayes	19
IsoCorrectoR	92
IsoCorrectoRGUI	53
IsoformSwitchAnalyzeR	255
IsoGeneGUI	14
ISoLDE	41
isomiRs	123
iSPlot	1
ITALICS	58
iterativeBMA	55
iterativeBMAsurv	50
iterClust	48
iteremoval	7
IVAS	76
ivygapSE	45
IWTomics	48
jmosaics	6
joda	13
JunctionSeq	12
karyoploteR	885
katdetectr	50
KBoost	41
KCsmart	60
kebabs	142
KEGGgraph	5516
KEGGlincs	66
keggorth	1
keggorthology	139
KEGGprofile	22
KEGGREST	34998
KEGGSOAP	4
kimod	5
KinSwingR	50
kissDE	54
KnowSeq	53
knowYourCG	1
LACE	106
lapmix	48
LBE	244
ldblock	76
LEA	516
LedPred	43
lefser	579
lemur	41
les	90
levi	42
lfa	282
limma	31365
limmaGUI	68
LINC	7
LineagePulse	44
lineagespot	42
LinkHD	48
Linnorm	216
LinTInd	47
lionessR	48
lipidr	186
LiquidAssociation	78
lisaClust	131
lmdme	51
LMGene	13
LOBSTAHS	53
loci2path	45
logicFS	83
logitT	36
Logolas	7
lol	10
LOLA	288
LoomExperiment	582
LowMACA	17
LPE	85
LPEadj	47
lpNet	60
lpsymphony	1177
LRBaseDbi	110
LRcell	51
lumi	1132
lute	4
LVSmiRNA	13
LymphoSeq	59
M3C	694
M3D	7
M3Drop	586
m6Aboost	38
maanova	21
Maaslin2	990
Macarron	50
macat	58
maCorrPlot	51
MACPET	8
MACSQuantifyR	40
MACSr	106
maDB	3
made4	235
MADSEQ	51
maftools	2564
MAGAR	152
MAGeCKFlute	364
magpie	43
magrene	42
MAI	50
maigesPack	44
MAIT	57
makecdfenv	167
makePlatformDesign	2
MANOR	52
manta	14
MantelCorr	45
mAPKL	12
maPredictDSC	57
mapscape	48
mariner	57
marr	41
marray	1891
martini	51
maser	123
maSigPro	253
maskBAD	57
MassArray	49
massiR	56
MassSpecWavelet	1816
MAST	2031
mastR	100
matchBox	51
matchprobes	2
MatrixGenerics	39135
MatrixQCvis	117
MatrixRider	58
matter	203
MaxContrastProjection	8
MBAmethyl	38
MBASED	56
MBCB	50
MBECS	59
mbkmeans	448
mbOmic	17
mBPCR	56
MBQN	50
mbQTL	43
MBttest	48
mcaGUI	13
MCbiclust	49
MCRestimate	12
mCSEA	106
mdgsa	9
mdp	52
mdqc	98
MDTS	49
MEAL	77
MeasurementError.cor	46
MEAT	41
MEB	44
MEDIPS	106
MEDME	52
megadepth	120
MEIGOR	53
Melissa	47
memes	183
MergeMaid	15
Mergeomics	59
MeSHDbi	250
meshes	146
meshr	137
MeSHSim	2
MesKit	66
messina	52
metaArray	13
Metab	31
metabCombiner	47
metabinR	38
MetaboAnnotation	307
MetaboCoreUtils	1153
metabolomicsWorkbenchR	74
metabomxtr	51
MetaboSignal	115
metaCCA	192
MetaCyto	71
metagene	36
metagene2	65
metagenomeFeatures	8
metagenomeSeq	1643
metahdep	55
metaMS	100
MetaNeighbor	90
MetaPhOR	50
metapod	4613
metapone	61
metaSeq	63
metaseqR	18
metaseqR2	46
metavizr	12
MetaVolcanoR	61
metaX	2
MetCirc	66
MethCP	8
methimpute	55
methInheritSim	60
methodical	3
MethPed	49
MethReg	68
methrix	77
MethTargetedNGS	47
methVisual	13
methyAnalysis	19
MethylAid	87
methylCC	69
methylclock	146
methylGSA	104
methyLImp2	1
methylInheritance	62
methylKit	630
MethylMix	94
methylMnM	72
methylPipe	119
methylscaper	46
MethylSeekR	136
methylSig	68
methylumi	1443
methyvim	7
MetID	50
MetNet	49
mfa	79
Mfuzz	1140
MGFM	57
MGFR	60
MGnifyR	1
mgsa	106
mia	1434
miaSim	95
miaViz	230
MiChip	50
microbiome	1619
microbiomeDASim	53
microbiomeExplorer	74
microbiomeMarker	365
MicrobiomeProfiler	100
MicrobiotaProcess	490
microRNA	156
microSTASIS	42
MICSQTL	26
midasHLA	55
MIGSA	14
miloR	257
mimager	59
MIMOSA	33
mina	42
MineICA	70
minet	761
minfi	2319
MinimumDistance	64
MiPP	51
miQC	104
MIRA	120
MiRaGE	57
miRBaseConverter	124
miRcomp	48
mirIntegrator	62
MIRit	2
miRLAB	60
miRmine	33
miRNAmeConverter	53
miRNApath	61
miRNAtap	143
miRSM	35
miRsponge	5
miRspongeR	47
Mirsynergy	10
mirTarRnaSeq	58
missMethyl	973
missRows	48
mistyR	87
mitch	61
mitoClone2	53
mitoODE	11
mixOmics	2906
MLInterfaces	380
mlm4omics	2
MLP	121
MLSeq	154
MMAPPR2	22
MMDiff	7
MMDiff2	48
mmgmos	1
mmnet	8
MmPalateMiRNA	13
MMUPHin	103
mnem	145
moanin	121
mobileRNA	3
MobilityTransformR	38
MODA	51
ModCon	38
Modstrings	208
MOFA	6
MOFA2	433
MOGAMUN	47
mogsa	159
MoleculeExperiment	57
MOMA	57
monaLisa	119
monocle	3041
Moonlight2R	33
MoonlightR	67
MoPS	6
mosaics	133
mosbi	46
MOSim	45
Motif2Site	42
motifbreakR	204
motifcounter	55
MotifDb	646
motifmatchr	1309
motifRG	15
motifStack	719
motifTestR	1
MotIV	30
MouseFM	96
MPFE	41
mpra	53
MPRAnalyze	62
MQmetrics	44
mQTL.NMR	5
msa	1519
MSA2dist	123
MsBackendMassbank	72
MsBackendMgf	466
MsBackendMsp	207
MsBackendRawFileReader	57
MsBackendSql	58
MsCoreUtils	3487
MsDataHub	57
MSEADbi	3
MsExperiment	803
MsFeatures	1602
msgbsR	68
MSGFgui	9
MSGFplus	13
msImpute	83
mslp	37
msmsEDA	276
msmsTests	259
MSnbase	3174
MSnID	239
MSPrep	103
msPurity	77
msqrob2	111
MsQuality	60
MSstats	503
MSstatsBig	23
MSstatsConvert	478
MSstatsLiP	69
MSstatsLOBD	43
MSstatsPTM	190
MSstatsQC	69
MSstatsQCgui	40
MSstatsSampleSize	24
MSstatsShiny	95
MSstatsTMT	270
MSstatsTMTPTM	3
MTseeker	2
MuData	53
Mulcom	72
MultiAssayExperiment	4903
MultiBaC	64
multiClust	80
multicrispr	57
MultiDataSet	1193
multiGSEA	108
multiHiCcompare	177
MultiMed	50
multiMiR	222
MultimodalExperiment	38
multiOmicsViz	43
MultiRNAflow	25
multiscan	51
multiSight	76
multiWGCNA	40
multtest	12178
mumosa	65
MungeSumstats	966
muscat	400
muscle	309
musicatk	76
MutationalPatterns	332
MVCClass	89
mvGST	3
MWASTools	147
mygene	344
myvariant	79
mzID	3024
mzR	3322
NADfinder	53
NanoMethViz	76
NanoStringDiff	90
NanoStringNCTools	385
NanoStringQCPro	49
nanotatoR	103
NanoTube	80
NarrowPeaks	14
NBAMSeq	81
NBSplice	10
ncdfFlow	1144
ncGTW	41
NCIgraph	113
ncRNAtools	43
ndexr	67
neaGUI	6
nearBynding	45
Nebulosa	966
NeighborNet	25
nem	17
nempi	54
NetActivity	45
netbenchmark	7
netbiov	31
netboost	39
netboxr	9
netDx	48
nethet	48
netOmics	42
NetPathMiner	59
netprioR	45
netReg	7
netresponse	64
NetSAM	59
netSmooth	64
networkBMA	15
netZooR	57
NeuCA	33
NewWave	110
NGScopy	6
ngsReports	72
nipalsMCIA	24
nnNorm	55
nnSVG	86
NOISeq	571
nondetects	69
NoRCE	49
normalize450K	46
NormalyzerDE	144
NormqPCR	175
normr	133
NPARC	51
npGSEA	61
NTW	49
nucleoSim	54
nucleR	77
nuCpos	46
nudge	10
nullranges	155
NuPoP	67
NxtIRFcore	20
occugene	46
OCplus	80
octad	51
ODER	19
odseq	66
OGRE	55
OGSA	6
oligo	1616
oligoClasses	1693
OLIN	88
OLINgui	52
omada	35
OmaDB	193
omicade4	136
OmicCircos	185
omicplotR	61
omicRexposome	54
OmicsLonDA	24
OmicsMarkeR	7
OMICsPCA	60
omicsPrint	51
omicsViewer	49
Omixer	48
OmnipathR	511
ompBAM	99
Onassis	8
oncomix	45
oncoscanR	40
OncoScore	52
OncoSimulR	59
oneChannelGUI	12
oneSENSE	19
onlineFDR	43
ontoCAT	10
ontoProc	219
ontoTools	2
openCyto	675
openPrimeR	124
openPrimeRui	60
OpenStats	43
OperaMate	3
oposSOM	72
oppar	58
oppti	42
optimalFlow	54
OPWeight	48
OrderedList	79
ORFhunteR	48
ORFik	201
OrganismDbi	3248
Organism.dplyr	420
orthogene	318
orthos	24
OSAT	61
Oscope	85
OTUbase	59
OutlierD	13
OUTRIDER	201
OutSplice	43
OVESEG	45
PAA	65
packFinder	48
padma	46
PADOG	237
pageRank	54
PAIRADISE	82
paircompviz	56
pairedGSEA	38
pairkat	38
pairseqsim	1
pamr	5
pandaR	125
panelcn.mops	82
PAnnBuilder	12
PanomiR	60
panp	53
PANR	54
PanViz	35
PanVizGenerator	9
PAPi	16
pareg	42
parglms	47
parody	96
partCNV	24
PAST	44
Path2PPI	56
pathifier	123
pathlinkR	4
PathNet	62
PathoStat	66
pathprint	6
pathRender	57
pathVar	25
pathview	4336
pathwayPCA	71
PathwaySplice	5
PatientGeneSets	1
paxtoolsr	84
Pbase	9
pbcmc	4
pcaExplorer	475
pcaGoPromoter	13
pcaMethods	5081
PCAN	55
PCAtools	1158
pcot2	13
PCpheno	13
pcxn	47
PDATK	80
pdInfoBuilder	110
pdmclass	10
PeacoQC	208
peakPantheR	56
PECA	60
peco	45
Pedixplorer	2
pengls	39
PepsNMR	114
pepStat	48
pepXMLTab	57
PERFect	41
periodicDNA	44
perturbatr	6
pfamAnalyzeR	224
PFP	19
PGA	9
pgca	44
PGSEA	49
pgUtils	2
pgxRpi	4
phantasus	146
phantasusLite	26
PharmacoGx	272
phemd	40
phenoDist	10
PhenoGeneRanker	38
phenomis	52
phenopath	86
phenoTest	133
PhenStat	57
philr	182
PhIPData	94
phosphonormalizer	46
PhosR	102
PhyloProfile	72
phyloseq	5345
Pi	75
piano	472
pickgene	48
PICS	115
Pigengene	118
PING	69
pint	10
pipeComp	48
pipeFrame	167
PIPETS	2
pkgDepTools	22
planet	176
planttfhunter	38
plasmut	19
plateCore	13
plethy	23
plgem	109
plier	111
PloGO2	69
plotgardener	337
plotGrouper	45
PLPE	53
plrs	12
PLSDAbatch	3
plw	13
plyinteractions	29
plyranges	1232
pmm	42
pmp	114
PoDCall	43
podkat	51
pogos	62
polyester	120
Polyfit	7
POMA	75
POST	7
PoTRA	7
PowerExplorer	6
powerTCR	384
POWSC	55
ppcseq	45
PPInfer	120
ppiStats	15
pqsfinder	74
prada	19
pram	43
prebs	70
preciseTAD	53
PrecisionTrialDrawer	6
PREDA	83
predictionet	13
preprocessCore	14050
primirTSS	59
PrInCE	53
Prize	7
proActiv	59
proBAMr	51
proBatch	35
PROcess	90
procoil	58
ProCoNA	11
proDA	216
proFIA	14
profileplyr	223
profileScoreDist	45
progeny	401
projectR	102
pRoloc	258
pRolocGUI	84
PROMISE	103
PROPER	81
PROPS	49
Prostar	71
prot2D	11
proteasy	30
proteinProfiles	48
ProteoDisco	47
ProteomicsAnnotationHubData	9
ProteoMM	73
proteoQC	8
protGear	50
ProtGenerics	11520
PSEA	47
psichomics	72
PSICQUIC	22
PSMatch	206
psygenet2r	66
ptairMS	45
PubScore	4
pulsedSilac	5
puma	98
PureCN	158
pvac	50
pvca	244
Pviz	78
PWMEnrich	156
pwOmics	102
pwrEWAS	33
qckitfastq	55
qcmetrics	89
QDNAseq	388
QFeatures	1286
qmtools	46
qpcrNorm	58
qpgraph	174
qPLEXanalyzer	67
qrqc	26
qsea	62
qsmooth	125
QSutils	55
qsvaR	108
QTLExperiment	21
Qtlizer	46
QUALIFIER	14
quantiseqr	445
quantro	344
quantsmooth	630
QuartPAC	58
QuasR	358
QuaternaryProd	71
QUBIC	134
qusage	389
qvalue	16677
R3CPET	57
r3Cseq	87
R453Plus1Toolbox	62
R4RNA	612
RadioGx	61
raer	22
RaggedExperiment	934
RAIDS	25
rain	88
rama	17
RamiGO	10
ramr	42
ramwas	127
RandomWalkRestartMH	114
randPack	54
randRotation	39
RankProd	290
RAREsim	39
RareVariantVis	59
Rariant	14
Rarr	105
rawDiag	0
rawrr	203
RbcBook1	75
Rbec	51
RBGL	9461
RBioFormats	102
RBioinf	61
rBiopaxParser	167
RBM	54
Rbowtie	510
Rbowtie2	315
rbsurv	60
Rbwa	98
Rcade	20
RCAS	122
RCASPAR	47
rcellminer	62
rCGH	106
Rchemcpp	13
RchyOptimyx	13
RcisTarget	845
RCM	55
Rcollectl	28
Rcpi	118
RCSL	31
Rcwl	101
RcwlPipelines	92
RCX	91
RCy3	939
RCyjs	70
RCytoscape	12
RDAVIDWebService	33
Rdbi	2
RdbiPgSQL	1
rDGIdb	79
Rdisop	460
RDRToolbox	119
ReactomeContentService4R	97
ReactomeGraph4R	40
ReactomeGSA	223
ReactomePA	2330
readat	7
ReadqPCR	203
reb	12
REBET	42
rebook	179
receptLoss	38
reconsi	48
recount	426
recount3	309
recountmethylation	58
recoup	51
RedeR	327
RedisParam	40
REDseq	82
RefNet	12
RefPlus	42
RegEnrich	101
regionalpcs	26
RegionalST	33
regioneR	2056
regioneReloaded	45
regionReport	118
regsplice	45
regutools	61
REMP	66
Repitools	327
ReportingTools	720
reposTools	0
RepViz	103
ReQON	50
ResidualMatrix	3407
RESOLVE	53
Resourcerer	4
restfulSE	118
retrofit	39
ReUseData	39
rexposome	100
rfaRm	39
Rfastp	134
rflowcyt	2
rfPred	59
rGADEM	277
RGalaxy	15
rGenomeTracks	43
Rgin	6
RGMQL	49
RgnTX	42
rgoslin	59
RGraph2js	50
Rgraphviz	9864
rGREAT	665
RGSEA	64
rgsepd	52
rhdf5	19486
rhdf5client	143
rhdf5filters	18754
Rhdf5lib	22922
Rhisat2	219
Rhtslib	23840
rHVDM	11
RiboCrypt	47
RiboDiPA	48
RiboProfiling	81
ribor	45
riboSeqR	40
ribosomeProfilingQC	75
rifi	37
rifiComparative	33
RImmPort	44
Ringo	374
Rintact	1
RIPAT	31
RIPSeeker	23
Risa	62
RITAN	60
RIVER	46
RJMCMCNucleosomes	51
RLassoCox	47
RLMM	51
RLSeq	39
RMAGEML	2
Rmagpie	50
RMAPPER	3
RMassBank	97
rMAT	10
rmelting	63
RmiR	13
Rmmquant	45
rmspc	51
RNAAgeCalc	70
RNAdecay	33
rnaEditr	46
RNAinteract	80
RNAither	15
RNAmodR	114
RNAmodR.AlkAnilineSeq	55
RNAmodR.ML	48
RNAmodR.RiboMethSeq	51
RNAprobR	7
RNAsense	41
rnaseqcomp	57
RNAseqCovarImpute	20
rnaSeqMap	15
RNASeqPower	141
RNASeqR	8
RnaSeqSampleSize	94
RnBeads	284
Rnits	48
roar	57
roastgsa	20
ROC	1030
ROCpAI	41
RolDE	45
Roleswitch	12
Rolexa	8
rols	419
ROntoTools	211
ropls	1185
ROSeq	42
ROTS	203
RPA	98
rprimer	69
RProtoBufLib	2686
RpsiXML	18
rpx	246
Rqc	264
rqt	58
rqubic	79
rRDP	62
Rredland	1
RRHO	97
rrvgo	441
Rsamtools	22785
rsbml	149
rScudo	48
rsemmed	40
RSeqAn	79
rSFFreader	9
RSNPper	1
Rsubread	2262
RSVSim	63
rSWeeP	43
rTANDEM	17
RTCA	56
RTCGA	552
RTCGAToolbox	588
RTN	167
RTNduals	83
RTNsurvival	64
RTools4TB	1
RTopper	54
Rtpca	42
rtracklayer	21000
Rtreemix	54
rTRM	138
rTRMui	60
runibic	75
Ruuid	4
RUVcorr	55
RUVnormalize	63
RUVSeq	935
Rvisdiff	20
RVS	47
RWebServices	3
rWikiPathways	382
S4Arrays	34061
S4Vectors	54089
safe	603
SAGElyzer	1
sagenhaft	50
SAGx	16
SAIGEgds	58
samExploreR	7
sampleClassifier	56
SamSPECTRAL	147
sangeranalyseR	175
sangerseqR	884
SANTA	59
sapFinder	13
saps	2
SARC	24
sarks	42
saseR	4
satuRn	253
savR	31
SBGNview	160
sbgr	1
SBMLR	64
SC3	407
Scale4C	46
ScaledMatrix	11740
scAlign	16
scanMiR	73
scanMiRApp	54
scAnnotatR	124
SCAN.UPC	150
SCANVIS	58
SCArray	75
SCArray.sat	44
SCATE	84
scater	6673
scatterHatch	39
scBFA	52
SCBN	75
scBubbletree	45
scCB2	50
scClassifR	2
scClassify	83
sccomp	90
scDataviz	76
scDblFinder	1342
scDD	137
scDDboost	41
scde	338
scDesign3	31
scds	489
SCFA	42
scFeatureFilter	46
scFeatures	61
scfind	5
scGPS	52
schex	227
scHOT	64
scider	26
scifer	48
ScISI	19
scMAGeCK	7
scmap	260
scMerge	488
scMET	46
scmeth	67
scMitoMut	2
SCnorm	92
scone	107
Sconify	50
SCOPE	53
scoreInvHap	52
scp	124
scPCA	85
scPipe	130
scran	4646
scReClassify	42
scRecover	55
screenCounter	36
ScreenR	37
scRepertoire	364
scRNAseqApp	59
scruff	66
scry	227
scShapes	41
scsR	13
scTensor	122
scTGIF	135
scTHI	41
scTreeViz	48
scuttle	9721
scviR	43
SDAMS	52
sechm	148
segmenter	52
segmentSeq	55
selectKSigs	44
SELEX	50
SemDist	47
semisup	43
SemSim	1
SEPA	5
SEPIRA	28
seq2pathway	112
seqArchR	81
seqArchRplus	45
SeqArray	898
seqbias	80
seqCAT	52
seqCNA	55
seqcombo	50
SeqGate	39
SeqGSEA	132
seq.hotSPOT	34
seqLogo	3469
seqPattern	646
seqplots	10
seqsetvis	60
SeqSQC	87
seqTools	119
SeqVarTools	443
sesame	656
SEtools	126
sevenbridges	61
sevenC	47
SGCP	105
SGSeq	307
SharedObject	142
shinyepico	62
shiny.gosling	4
shinyMethyl	102
shinyTANDEM	12
ShortRead	6226
SIAMCAT	110
SICtools	44
sigaR	13
SigCheck	53
sigFeature	203
SigFuge	54
siggenes	3219
sights	51
signatureSearch	210
signeR	71
signet	6
signifinder	58
sigPathway	30
SigsPack	47
sigsquared	47
SIM	54
SIMAT	51
SimBindProfiles	58
SimBu	58
SIMD	46
SimFFPE	46
similaRpeak	56
SIMLR	247
simona	39
simPIC	1
simpleaffy	101
simpleSeg	68
simplifyEnrichment	711
simulatorAPMS	2
simulatorZ	8
sincell	56
single	45
SingleCellExperiment	14491
SingleCellSignalR	248
singleCellTK	237
SingleMoleculeFootprinting	48
SingleR	3810
singscore	1247
SiPSiC	41
SISPA	32
sitadela	44
sitePath	52
sizepower	58
SJava	4
sketchR	2
skewr	39
slalom	102
SLGI	15
slingshot	1429
slinky	6
SLqPCR	58
SMAD	44
SMAP	46
smartid	1
SMITE	61
smoothclust	1
SNAGEE	53
snapCGH	108
snapcount	53
snifter	132
snm	165
SNPchip	19
SNPediaR	47
SNPhood	54
snpMatrix	9
SNPRelate	1622
snpStats	2258
soGGi	323
sojourner	11
SomatiCA	9
SomaticSignatures	183
SOMNiBUS	51
SpaceMarkers	1
SpacePAC	93
spade	10
Spaniel	72
sparrow	119
SparseArray	20137
sparseDOSSA	36
sparseMatrixStats	15195
sparsenetgls	44
SparseSignatures	53
spaSim	54
SpatialCPie	71
spatialDE	99
SpatialDecon	174
SpatialExperiment	1528
SpatialFeatureExperiment	149
spatialHeatmap	148
SpatialOmicsOverlay	59
spatzie	45
speckle	138
specL	56
SpeCond	69
Spectra	1416
SpectralTAD	85
SPEM	68
SPIA	635
SPIAT	101
spicyR	179
SpidermiR	88
spikeLI	43
spiky	42
spillR	4
spkTools	49
splatter	424
splicegear	12
spliceR	14
spliceSites	13
SpliceWiz	78
SplicingFactory	39
SplicingGraphs	88
splineTCDiffExpr	0
splineTimeR	69
SPLINTER	57
splots	210
SPONGE	63
spoon	1
SpotClean	86
SPOTlight	209
spotSegmentation	11
spqn	48
SPsimSeq	130
SQLDataFrame	43
SQUADD	47
sRACIPE	58
SRAdb	376
sRAP	14
SRGnet	6
srnadiff	46
sscore	34
sscu	47
sSeq	169
ssize	85
sSNAPPY	104
SSPA	64
ssPATHS	40
ssrch	74
ssviz	56
stageR	182
stam	1
STAN	15
standR	110
staRank	61
StarBioTrek	57
Starr	13
STATegRa	55
Statial	60
statTarget	92
STdeconvolve	118
stepNorm	51
stepwiseCM	8
stJoincount	54
strandCheckR	49
Streamer	56
STRINGdb	1112
STROMA4	31
struct	149
Structstrings	152
structToolbox	101
StructuralVariantAnnotation	208
SubCellBarCode	49
subSeq	65
SUITOR	38
SummarizedBenchmark	53
SummarizedExperiment	37488
Summix	36
supersigs	44
supraHex	429
surfaltr	46
SurfR	2
survcomp	1041
survtype	49
Sushi	65
sva	7018
svaNUMT	57
SVAPLSseq	6
svaRetro	57
SVM2CRM	6
SVMDO	100
SWATH2stats	59
SwathXtend	61
swfdr	54
SwimR	10
switchBox	120
switchde	53
synapsis	40
synapter	88
synergyfinder	181
SynExtend	50
synlet	46
SynMut	43
syntenet	118
systemPipeR	1185
systemPipeShiny	56
systemPipeTools	52
tadar	29
TADCompare	81
tanggle	60
TAPseq	52
target	44
TargetDecoy	40
TargetScore	62
TargetSearch	66
TarSeqQC	14
TBSignatureProfiler	61
TCC	184
TCGAbiolinks	3466
TCGAbiolinksGUI	26
TCGAutils	857
TCseq	149
TDARACNE	16
TDbasedUFE	72
TDbasedUFEadv	56
TEKRABber	103
TENxIO	47
tenXplore	56
TEQC	66
ternarynet	52
terraTCGAdata	47
TFARM	44
TFBSTools	3123
TFEA.ChIP	62
TFHAZ	49
TFutils	76
tidybulk	192
tidyCoverage	3
tidyomics	2
tidySingleCellExperiment	177
tidySpatialExperiment	3
tidySummarizedExperiment	314
tigre	59
TileDBArray	45
tilingArray	141
timecourse	68
timeOmics	66
timescape	73
TimeSeriesExperiment	9
TimiRGeN	65
TIN	48
TissueEnrich	161
TitanCNA	77
tkWidgets	1249
tLOH	43
TMixClust	59
TNBC.CMS	55
TnT	45
TOAST	376
tofsims	8
tomoda	40
tomoseqr	39
TOP	41
ToPASeq	7
topconfects	166
topdownr	70
topGO	3034
ToxicoGx	62
TPP	88
TPP2D	49
tpSVG	2
tracktables	118
trackViewer	479
tradeSeq	489
TrajectoryGeometry	37
TrajectoryUtils	1828
transcriptogramer	60
transcriptR	66
transformGamPoi	66
transite	51
tRanslatome	119
transmogR	2
transomics2cytoscape	45
TransView	53
TraRe	5
traseR	48
Travel	3
traviz	56
TreeAndLeaf	123
treeclimbR	2
treeio	19434
treekoR	53
TreeSummarizedExperiment	1472
TREG	45
trena	41
TReNA	1
Trendy	58
TRESS	93
tricycle	204
triform	14
trigger	58
trio	95
triplex	53
tripr	45
tRNA	141
tRNAdbImport	111
tRNAscanImport	72
TRONCO	67
TSAR	17
TSCAN	606
tscR	21
tspair	15
TSRchitect	10
TSSi	12
ttgsea	79
TTMap	44
TurboNorm	58
TVTB	59
tweeDEseq	130
twilight	108
twoddpcr	50
txcutr	41
txdbmaker	53
tximeta	1136
tximport	3330
TxRegInfra	6
TypeInfo	48
UCell	1167
UCSC.utils	498
Ularcirc	60
UMI4Cats	56
uncoverappLib	53
UNDO	71
unifiedWMWqPCR	56
UniProt.ws	420
Uniquorn	52
universalmotif	479
updateObject	41
uSORT	46
VAExprs	41
VanillaICE	182
VarCon	42
variancePartition	913
VariantAnnotation	9341
VariantExperiment	52
VariantFiltering	88
VariantTools	164
vasp	3
VaSP	54
vbmp	69
VCFArray	58
VDJdive	44
Vega	11
VegaMC	54
velociraptor	112
veloviz	45
VennDetail	213
VERSO	44
vidger	97
viper	712
virtualArray	5
ViSEAGO	121
VisiumIO	3
vissE	97
Voyager	102
VplotR	57
vsclust	48
vsn	5190
vtpnet	72
vulcan	61
waddR	51
wateRmelon	735
wavClusteR	58
waveTiling	14
weaver	58
webbioc	62
weitrix	48
widgetInvoke	1
widgetTools	1250
wiggleplotr	166
wpm	51
wppi	44
Wrench	1625
XBSeq	9
XCIR	4
xcms	1748
xcore	46
XDE	60
Xeva	56
XINA	43
xmapbridge	50
xmapcore	2
XNAString	46
xps	15
XVector	46877
y2hStat	0
yamss	60
YAPSA	77
yaqcaffy	15
yarn	136
zellkonverter	1022
zenith	128
zFPKM	105
zinbwave	878
zlibbioc	49610
ZygosityPredictor	40