enrichplot
This is the development version of enrichplot; for the stable release version, see enrichplot.
Visualization of Functional Enrichment Result
Bioconductor version: Development (3.21)
The 'enrichplot' package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analysis. It is mainly designed to work with the 'clusterProfiler' package suite. All the visualization methods are developed based on 'ggplot2' graphics.
Author: Guangchuang Yu [aut, cre] (ORCID:
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
citation("enrichplot")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("enrichplot")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("enrichplot")| enrichplot | HTML |
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization |
| Version | 1.27.1 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0) |
| Imports | aplot (>= 0.2.1), DOSE(>= 3.31.2), ggfun (>= 0.1.7), ggnewscale, ggplot2, ggrepel (>= 0.9.0), ggtangle (>= 0.0.4), graphics, grid, igraph, methods, plyr, purrr, RColorBrewer, reshape2, rlang, stats, utils, scatterpie, GOSemSim(>= 2.31.2), magrittr, ggtree, yulab.utils (>= 0.1.6) |
| System Requirements | |
| URL | https://yulab-smu.top/biomedical-knowledge-mining-book/ |
| Bug Reports | https://github.com/GuangchuangYu/enrichplot/issues |
See More
| Suggests | clusterProfiler, dplyr, europepmc, ggarchery, ggupset, glue, knitr, rmarkdown, org.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, ggHoriPlot, AnnotationDbi, ggplotify, ggridges, grDevices, gridExtra, ggstar, scales, ggtreeExtra, tidydr |
| Linking To | |
| Enhances | |
| Depends On Me | maEndToEnd |
| Imports Me | CBNplot, ChIPseeker, clusterProfiler, debrowser, enrichViewNet, meshes, MicrobiomeProfiler, ReactomePA, TDbasedUFEadv, ExpHunterSuite |
| Suggests Me | GeoTcgaData, mastR, methylGSA, ReporterScore, SCpubr |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | enrichplot_1.27.1.tar.gz |
| Windows Binary (x86_64) | enrichplot_1.27.1.zip (64-bit only) |
| macOS Binary (x86_64) | enrichplot_1.27.1.tgz |
| macOS Binary (arm64) | enrichplot_1.27.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/enrichplot |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/enrichplot |
| Bioc Package Browser | https://code.bioconductor.org/browse/enrichplot/ |
| Package Short Url | https://bioconductor.org/packages/enrichplot/ |
| Package Downloads Report | Download Stats |