ggtreeExtra
This is the development version of ggtreeExtra; for the stable release version, see ggtreeExtra.
An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"
Bioconductor version: Development (3.21)
'ggtreeExtra' extends the method for mapping and visualizing associated data on phylogenetic tree using 'ggtree'. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by 'ggtree' with the grammar of 'ggplot2'.
Author: Shuangbin Xu [aut, cre] (ORCID:
Maintainer: Shuangbin Xu <xshuangbin at 163.com>
citation("ggtreeExtra")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ggtreeExtra")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ggtreeExtra")| ggtreeExtra | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, Phylogenetics, Software, Visualization |
| Version | 1.17.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
| License | GPL (>= 3) |
| Depends | |
| Imports | ggplot2, utils, rlang, ggnewscale, stats, ggtree, tidytree (>= 0.3.9), cli, magrittr |
| System Requirements | |
| URL | https://github.com/YuLab-SMU/ggtreeExtra/ |
| Bug Reports | https://github.com/YuLab-SMU/ggtreeExtra/issues |
See More
| Suggests | treeio, ggstar, patchwork, knitr, rmarkdown, prettydoc, markdown, testthat (>= 3.0.0), pillar |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | MicrobiotaProcess |
| Suggests Me | enrichplot, ggmsa, pctax |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ggtreeExtra_1.17.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ggtreeExtra |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ggtreeExtra |
| Bioc Package Browser | https://code.bioconductor.org/browse/ggtreeExtra/ |
| Package Short Url | https://bioconductor.org/packages/ggtreeExtra/ |
| Package Downloads Report | Download Stats |